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OR56A1 (olfactory receptor family 56 subfamily A member 1)

Identity

Alias_namesolfactory receptor, family 56, subfamily A, member 1
Other aliasOR11-75
HGNC (Hugo) OR56A1
LocusID (NCBI) 120796
Atlas_Id 71399
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 6026671 and ends at 6027741 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR56A1   14781
Cards
Entrez_Gene (NCBI)OR56A1  120796  olfactory receptor family 56 subfamily A member 1
AliasesOR11-75
GeneCards (Weizmann)OR56A1
Ensembl hg19 (Hinxton)ENSG00000180934 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180934 [Gene_View]  chr11:6026671-6027741 [Contig_View]  OR56A1 [Vega]
ICGC DataPortalENSG00000180934
TCGA cBioPortalOR56A1
AceView (NCBI)OR56A1
Genatlas (Paris)OR56A1
WikiGenes120796
SOURCE (Princeton)OR56A1
Genetics Home Reference (NIH)OR56A1
Genomic and cartography
GoldenPath hg38 (UCSC)OR56A1  -     chr11:6026671-6027741 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR56A1  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR56A1 - 11p15.4 [CytoView hg19]  OR56A1 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR56A1 [Mapview hg19]  OR56A1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136904 BC136911
RefSeq transcript (Entrez)NM_001001917
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR56A1
Cluster EST : UnigeneHs.553543 [ NCBI ]
CGAP (NCI)Hs.553543
Alternative Splicing GalleryENSG00000180934
Gene ExpressionOR56A1 [ NCBI-GEO ]   OR56A1 [ EBI - ARRAY_EXPRESS ]   OR56A1 [ SEEK ]   OR56A1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR56A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)120796
GTEX Portal (Tissue expression)OR56A1
Human Protein AtlasENSG00000180934-OR56A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGH5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGH5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGH5
Splice isoforms : SwissVarQ8NGH5
PhosPhoSitePlusQ8NGH5
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)7TM_GPCR_Srsx (SM01381)  
Conserved Domain (NCBI)OR56A1
DMDM Disease mutations120796
Blocks (Seattle)OR56A1
SuperfamilyQ8NGH5
Human Protein Atlas [tissue]ENSG00000180934-OR56A1 [tissue]
Peptide AtlasQ8NGH5
HPRD17746
IPIIPI00303430   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGH5
IntAct (EBI)Q8NGH5
FunCoupENSG00000180934
BioGRIDOR56A1
STRING (EMBL)OR56A1
ZODIACOR56A1
Ontologies - Pathways
QuickGOQ8NGH5
Ontology : AmiGOdopamine neurotransmitter receptor activity, coupled via Gi/Go  synaptic transmission, dopaminergic  adrenergic receptor activity  olfactory receptor activity  plasma membrane  integral component of plasma membrane  negative regulation of adenylate cyclase activity  adenylate cyclase-inhibiting dopamine receptor signaling pathway  response to toxic substance  regulation of dopamine secretion  synaptic vesicle membrane  dopamine binding  response to drug  regulation of potassium ion transport  behavioral response to cocaine  behavioral response to ethanol  detection of chemical stimulus involved in sensory perception of smell  negative regulation of cytosolic calcium ion concentration  negative regulation of synaptic transmission, glutamatergic  phospholipase C-activating dopamine receptor signaling pathway  adenylate cyclase-activating adrenergic receptor signaling pathway  negative regulation of voltage-gated calcium channel activity  
Ontology : EGO-EBIdopamine neurotransmitter receptor activity, coupled via Gi/Go  synaptic transmission, dopaminergic  adrenergic receptor activity  olfactory receptor activity  plasma membrane  integral component of plasma membrane  negative regulation of adenylate cyclase activity  adenylate cyclase-inhibiting dopamine receptor signaling pathway  response to toxic substance  regulation of dopamine secretion  synaptic vesicle membrane  dopamine binding  response to drug  regulation of potassium ion transport  behavioral response to cocaine  behavioral response to ethanol  detection of chemical stimulus involved in sensory perception of smell  negative regulation of cytosolic calcium ion concentration  negative regulation of synaptic transmission, glutamatergic  phospholipase C-activating dopamine receptor signaling pathway  adenylate cyclase-activating adrenergic receptor signaling pathway  negative regulation of voltage-gated calcium channel activity  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR56A1
Atlas of Cancer Signalling NetworkOR56A1
Wikipedia pathwaysOR56A1
Orthology - Evolution
OrthoDB120796
GeneTree (enSembl)ENSG00000180934
Phylogenetic Trees/Animal Genes : TreeFamOR56A1
HOVERGENQ8NGH5
HOGENOMQ8NGH5
Homologs : HomoloGeneOR56A1
Homology/Alignments : Family Browser (UCSC)OR56A1
Gene fusions - Rearrangements
Tumor Fusion PortalOR56A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR56A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR56A1
dbVarOR56A1
ClinVarOR56A1
1000_GenomesOR56A1 
Exome Variant ServerOR56A1
ExAC (Exome Aggregation Consortium)ENSG00000180934
GNOMAD BrowserENSG00000180934
Genetic variants : HAPMAP120796
Genomic Variants (DGV)OR56A1 [DGVbeta]
DECIPHEROR56A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR56A1 
Mutations
ICGC Data PortalOR56A1 
TCGA Data PortalOR56A1 
Broad Tumor PortalOR56A1
OASIS PortalOR56A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR56A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR56A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR56A1
DgiDB (Drug Gene Interaction Database)OR56A1
DoCM (Curated mutations)OR56A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR56A1 (select a term)
intoGenOR56A1
Cancer3DOR56A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR56A1
MedgenOR56A1
Genetic Testing Registry OR56A1
NextProtQ8NGH5 [Medical]
TSGene120796
GENETestsOR56A1
Target ValidationOR56A1
Huge Navigator OR56A1 [HugePedia]
snp3D : Map Gene to Disease120796
BioCentury BCIQOR56A1
ClinGenOR56A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD120796
Chemical/Pharm GKB GenePA32443
Clinical trialOR56A1
Miscellaneous
canSAR (ICR)OR56A1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR56A1
EVEXOR56A1
GoPubMedOR56A1
iHOPOR56A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:24:40 CET 2017

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