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OR56A3 (olfactory receptor family 56 subfamily A member 3)

Identity

Alias_namesOR56A6
OR56A3P
olfactory receptor, family 56, subfamily A, member 3
Other aliasOR56A2P
HGNC (Hugo) OR56A3
LocusID (NCBI) 390083
Atlas_Id 71400
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5947347 and ends at 5948294 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR56A3   14786
Cards
Entrez_Gene (NCBI)OR56A3  390083  olfactory receptor family 56 subfamily A member 3
AliasesOR56A2P; OR56A3P; OR56A6
GeneCards (Weizmann)OR56A3
Ensembl hg19 (Hinxton)ENSG00000184478 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184478 [Gene_View]  chr11:5947347-5948294 [Contig_View]  OR56A3 [Vega]
ICGC DataPortalENSG00000184478
TCGA cBioPortalOR56A3
AceView (NCBI)OR56A3
Genatlas (Paris)OR56A3
WikiGenes390083
SOURCE (Princeton)OR56A3
Genetics Home Reference (NIH)OR56A3
Genomic and cartography
GoldenPath hg38 (UCSC)OR56A3  -     chr11:5947347-5948294 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR56A3  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR56A3 - 11p15.4 [CytoView hg19]  OR56A3 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR56A3 [Mapview hg19]  OR56A3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001003443
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR56A3
Cluster EST : UnigeneHs.553741 [ NCBI ]
CGAP (NCI)Hs.553741
Alternative Splicing GalleryENSG00000184478
Gene ExpressionOR56A3 [ NCBI-GEO ]   OR56A3 [ EBI - ARRAY_EXPRESS ]   OR56A3 [ SEEK ]   OR56A3 [ MEM ]
Gene Expression Viewer (FireBrowse)OR56A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390083
GTEX Portal (Tissue expression)OR56A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH54   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH54  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH54
Splice isoforms : SwissVarQ8NH54
PhosPhoSitePlusQ8NH54
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR56A3
DMDM Disease mutations390083
Blocks (Seattle)OR56A3
SuperfamilyQ8NH54
Human Protein AtlasENSG00000184478
Peptide AtlasQ8NH54
HPRD17747
IPIIPI00169157   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH54
IntAct (EBI)Q8NH54
FunCoupENSG00000184478
BioGRIDOR56A3
STRING (EMBL)OR56A3
ZODIACOR56A3
Ontologies - Pathways
QuickGOQ8NH54
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR56A3
Atlas of Cancer Signalling NetworkOR56A3
Wikipedia pathwaysOR56A3
Orthology - Evolution
OrthoDB390083
GeneTree (enSembl)ENSG00000184478
Phylogenetic Trees/Animal Genes : TreeFamOR56A3
HOVERGENQ8NH54
HOGENOMQ8NH54
Homologs : HomoloGeneOR56A3
Homology/Alignments : Family Browser (UCSC)OR56A3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR56A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR56A3
dbVarOR56A3
ClinVarOR56A3
1000_GenomesOR56A3 
Exome Variant ServerOR56A3
ExAC (Exome Aggregation Consortium)OR56A3 (select the gene name)
Genetic variants : HAPMAP390083
Genomic Variants (DGV)OR56A3 [DGVbeta]
DECIPHEROR56A3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR56A3 
Mutations
ICGC Data PortalOR56A3 
TCGA Data PortalOR56A3 
Broad Tumor PortalOR56A3
OASIS PortalOR56A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR56A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR56A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR56A3
DgiDB (Drug Gene Interaction Database)OR56A3
DoCM (Curated mutations)OR56A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR56A3 (select a term)
intoGenOR56A3
Cancer3DOR56A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR56A3
Genetic Testing Registry OR56A3
NextProtQ8NH54 [Medical]
TSGene390083
GENETestsOR56A3
Target ValidationOR56A3
Huge Navigator OR56A3 [HugePedia]
snp3D : Map Gene to Disease390083
BioCentury BCIQOR56A3
ClinGenOR56A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390083
Chemical/Pharm GKB GenePA32445
Clinical trialOR56A3
Miscellaneous
canSAR (ICR)OR56A3 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR56A3
EVEXOR56A3
GoPubMedOR56A3
iHOPOR56A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:34:37 CEST 2017

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