Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR56A4 (olfactory receptor family 56 subfamily A member 4)

Identity

Alias_namesolfactory receptor, family 56, subfamily A, member 4
Other aliasOR11-49
HGNC (Hugo) OR56A4
LocusID (NCBI) 120793
Atlas_Id 71401
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 6002051 and ends at 6003148 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OR56A4   14791
Cards
Entrez_Gene (NCBI)OR56A4  120793  olfactory receptor family 56 subfamily A member 4
AliasesOR11-49
GeneCards (Weizmann)OR56A4
Ensembl hg19 (Hinxton)ENSG00000183389 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183389 [Gene_View]  ENSG00000183389 [Sequence]  chr11:6002051-6003148 [Contig_View]  OR56A4 [Vega]
ICGC DataPortalENSG00000183389
TCGA cBioPortalOR56A4
AceView (NCBI)OR56A4
Genatlas (Paris)OR56A4
WikiGenes120793
SOURCE (Princeton)OR56A4
Genetics Home Reference (NIH)OR56A4
Genomic and cartography
GoldenPath hg38 (UCSC)OR56A4  -     chr11:6002051-6003148 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR56A4  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR56A4 - 11p15.4 [CytoView hg19]  OR56A4 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR56A4 [Mapview hg19]  OR56A4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136986
RefSeq transcript (Entrez)NM_001005179
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR56A4
Cluster EST : UnigeneHs.553571 [ NCBI ]
CGAP (NCI)Hs.553571
Alternative Splicing GalleryENSG00000183389
Gene ExpressionOR56A4 [ NCBI-GEO ]   OR56A4 [ EBI - ARRAY_EXPRESS ]   OR56A4 [ SEEK ]   OR56A4 [ MEM ]
Gene Expression Viewer (FireBrowse)OR56A4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)120793
GTEX Portal (Tissue expression)OR56A4
Human Protein AtlasENSG00000183389-OR56A4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGH8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGH8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGH8
Splice isoforms : SwissVarQ8NGH8
PhosPhoSitePlusQ8NGH8
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR56A4
DMDM Disease mutations120793
Blocks (Seattle)OR56A4
SuperfamilyQ8NGH8
Human Protein Atlas [tissue]ENSG00000183389-OR56A4 [tissue]
Peptide AtlasQ8NGH8
HPRD15026
IPIIPI00303432   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGH8
IntAct (EBI)Q8NGH8
FunCoupENSG00000183389
BioGRIDOR56A4
STRING (EMBL)OR56A4
ZODIACOR56A4
Ontologies - Pathways
QuickGOQ8NGH8
Ontology : AmiGO###############################################################################################################################################################################################################################################################                                            
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                                            
NDEx NetworkOR56A4
Atlas of Cancer Signalling NetworkOR56A4
Wikipedia pathwaysOR56A4
Orthology - Evolution
OrthoDB120793
GeneTree (enSembl)ENSG00000183389
Phylogenetic Trees/Animal Genes : TreeFamOR56A4
HOVERGENQ8NGH8
HOGENOMQ8NGH8
Homologs : HomoloGeneOR56A4
Homology/Alignments : Family Browser (UCSC)OR56A4
Gene fusions - Rearrangements
Fusion : QuiverOR56A4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR56A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR56A4
dbVarOR56A4
ClinVarOR56A4
1000_GenomesOR56A4 
Exome Variant ServerOR56A4
ExAC (Exome Aggregation Consortium)ENSG00000183389
GNOMAD BrowserENSG00000183389
Varsome BrowserOR56A4
Genetic variants : HAPMAP120793
Genomic Variants (DGV)OR56A4 [DGVbeta]
DECIPHEROR56A4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR56A4 
Mutations
ICGC Data PortalOR56A4 
TCGA Data PortalOR56A4 
Broad Tumor PortalOR56A4
OASIS PortalOR56A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR56A4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR56A4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR56A4
DgiDB (Drug Gene Interaction Database)OR56A4
DoCM (Curated mutations)OR56A4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR56A4 (select a term)
intoGenOR56A4
Cancer3DOR56A4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR56A4
MedgenOR56A4
Genetic Testing Registry OR56A4
NextProtQ8NGH8 [Medical]
TSGene120793
GENETestsOR56A4
Target ValidationOR56A4
Huge Navigator OR56A4 [HugePedia]
snp3D : Map Gene to Disease120793
BioCentury BCIQOR56A4
ClinGenOR56A4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD120793
Chemical/Pharm GKB GenePA32446
Clinical trialOR56A4
Miscellaneous
canSAR (ICR)OR56A4 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR56A4
EVEXOR56A4
GoPubMedOR56A4
iHOPOR56A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:22:04 CEST 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.