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OR56A5 (olfactory receptor, family 56, subfamily A, member 5)

Identity

Alias_namesOR56A5P
olfactory receptor, family 56, subfamily A, member 5
Other alias
HGNC (Hugo) OR56A5
LocusID (NCBI) 390084
Atlas_Id 71402
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5988783 and ends at 5989724 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR56A5   14792
Cards
Entrez_Gene (NCBI)OR56A5  390084  olfactory receptor, family 56, subfamily A, member 5
AliasesOR56A5P
GeneCards (Weizmann)OR56A5
Ensembl hg19 (Hinxton)ENSG00000188691 [Gene_View]  chr11:5988783-5989724 [Contig_View]  OR56A5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000188691 [Gene_View]  chr11:5988783-5989724 [Contig_View]  OR56A5 [Vega]
ICGC DataPortalENSG00000188691
TCGA cBioPortalOR56A5
AceView (NCBI)OR56A5
Genatlas (Paris)OR56A5
WikiGenes390084
SOURCE (Princeton)OR56A5
Genetics Home Reference (NIH)OR56A5
Genomic and cartography
GoldenPath hg19 (UCSC)OR56A5  -     chr11:5988783-5989724 -  11p15.4   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR56A5  -     11p15.4   [Description]    (hg38-Dec_2013)
EnsemblOR56A5 - 11p15.4 [CytoView hg19]  OR56A5 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR56A5 [Mapview hg19]  OR56A5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001146033
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)OR56A5
Cluster EST : UnigeneHs.719888 [ NCBI ]
CGAP (NCI)Hs.719888
Alternative Splicing GalleryENSG00000188691
Gene ExpressionOR56A5 [ NCBI-GEO ]   OR56A5 [ EBI - ARRAY_EXPRESS ]   OR56A5 [ SEEK ]   OR56A5 [ MEM ]
Gene Expression Viewer (FireBrowse)OR56A5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390084
GTEX Portal (Tissue expression)OR56A5
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7T3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7T3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7T3
Splice isoforms : SwissVarP0C7T3
PhosPhoSitePlusP0C7T3
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR56A5
DMDM Disease mutations390084
Blocks (Seattle)OR56A5
SuperfamilyP0C7T3
Human Protein AtlasENSG00000188691
Peptide AtlasP0C7T3
IPIIPI00399295   
Protein Interaction databases
DIP (DOE-UCLA)P0C7T3
IntAct (EBI)P0C7T3
FunCoupENSG00000188691
BioGRIDOR56A5
STRING (EMBL)OR56A5
ZODIACOR56A5
Ontologies - Pathways
QuickGOP0C7T3
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR56A5
Atlas of Cancer Signalling NetworkOR56A5
Wikipedia pathwaysOR56A5
Orthology - Evolution
OrthoDB390084
GeneTree (enSembl)ENSG00000188691
Phylogenetic Trees/Animal Genes : TreeFamOR56A5
HOVERGENP0C7T3
HOGENOMP0C7T3
Homologs : HomoloGeneOR56A5
Homology/Alignments : Family Browser (UCSC)OR56A5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR56A5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR56A5
dbVarOR56A5
ClinVarOR56A5
1000_GenomesOR56A5 
Exome Variant ServerOR56A5
ExAC (Exome Aggregation Consortium)OR56A5 (select the gene name)
Genetic variants : HAPMAP390084
Genomic Variants (DGV)OR56A5 [DGVbeta]
DECIPHER (Syndromes)11:5988783-5989724  ENSG00000188691
CONAN: Copy Number AnalysisOR56A5 
Mutations
ICGC Data PortalOR56A5 
TCGA Data PortalOR56A5 
Broad Tumor PortalOR56A5
OASIS PortalOR56A5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOR56A5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR56A5
DgiDB (Drug Gene Interaction Database)OR56A5
DoCM (Curated mutations)OR56A5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR56A5 (select a term)
intoGenOR56A5
Cancer3DOR56A5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR56A5
Genetic Testing Registry OR56A5
NextProtP0C7T3 [Medical]
TSGene390084
GENETestsOR56A5
Huge Navigator OR56A5 [HugePedia]
snp3D : Map Gene to Disease390084
BioCentury BCIQOR56A5
ClinGenOR56A5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390084
Chemical/Pharm GKB GenePA32447
Clinical trialOR56A5
Miscellaneous
canSAR (ICR)OR56A5 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR56A5
EVEXOR56A5
GoPubMedOR56A5
iHOPOR56A5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:53 CET 2017

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