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OR56B1 (olfactory receptor, family 56, subfamily B, member 1)

Identity

Alias_namesOR56B1P
olfactory receptor, family 56, subfamily B, member 1
Other aliasOR11-65
HGNC (Hugo) OR56B1
LocusID (NCBI) 387748
Atlas_Id 71403
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5757678 and ends at 5758768 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR56B1   15245
Cards
Entrez_Gene (NCBI)OR56B1  387748  olfactory receptor, family 56, subfamily B, member 1
AliasesOR11-65; OR56B1P
GeneCards (Weizmann)OR56B1
Ensembl hg19 (Hinxton)ENSG00000181023 [Gene_View]  chr11:5757678-5758768 [Contig_View]  OR56B1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000181023 [Gene_View]  chr11:5757678-5758768 [Contig_View]  OR56B1 [Vega]
ICGC DataPortalENSG00000181023
TCGA cBioPortalOR56B1
AceView (NCBI)OR56B1
Genatlas (Paris)OR56B1
WikiGenes387748
SOURCE (Princeton)OR56B1
Genetics Home Reference (NIH)OR56B1
Genomic and cartography
GoldenPath hg19 (UCSC)OR56B1  -     chr11:5757678-5758768 +  11p15.4   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR56B1  -     11p15.4   [Description]    (hg38-Dec_2013)
EnsemblOR56B1 - 11p15.4 [CytoView hg19]  OR56B1 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR56B1 [Mapview hg19]  OR56B1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK122668 BC137184 BC137185
RefSeq transcript (Entrez)NM_001005180
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)OR56B1
Cluster EST : UnigeneHs.689609 [ NCBI ]
CGAP (NCI)Hs.689609
Alternative Splicing GalleryENSG00000181023
Gene ExpressionOR56B1 [ NCBI-GEO ]   OR56B1 [ EBI - ARRAY_EXPRESS ]   OR56B1 [ SEEK ]   OR56B1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR56B1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387748
GTEX Portal (Tissue expression)OR56B1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGI3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGI3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGI3
Splice isoforms : SwissVarQ8NGI3
PhosPhoSitePlusQ8NGI3
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR56B1
DMDM Disease mutations387748
Blocks (Seattle)OR56B1
SuperfamilyQ8NGI3
Human Protein AtlasENSG00000181023
Peptide AtlasQ8NGI3
HPRD17748
IPIIPI00375706   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGI3
IntAct (EBI)Q8NGI3
FunCoupENSG00000181023
BioGRIDOR56B1
STRING (EMBL)OR56B1
ZODIACOR56B1
Ontologies - Pathways
QuickGOQ8NGI3
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR56B1
Atlas of Cancer Signalling NetworkOR56B1
Wikipedia pathwaysOR56B1
Orthology - Evolution
OrthoDB387748
GeneTree (enSembl)ENSG00000181023
Phylogenetic Trees/Animal Genes : TreeFamOR56B1
HOVERGENQ8NGI3
HOGENOMQ8NGI3
Homologs : HomoloGeneOR56B1
Homology/Alignments : Family Browser (UCSC)OR56B1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR56B1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR56B1
dbVarOR56B1
ClinVarOR56B1
1000_GenomesOR56B1 
Exome Variant ServerOR56B1
ExAC (Exome Aggregation Consortium)OR56B1 (select the gene name)
Genetic variants : HAPMAP387748
Genomic Variants (DGV)OR56B1 [DGVbeta]
DECIPHER (Syndromes)11:5757678-5758768  ENSG00000181023
CONAN: Copy Number AnalysisOR56B1 
Mutations
ICGC Data PortalOR56B1 
TCGA Data PortalOR56B1 
Broad Tumor PortalOR56B1
OASIS PortalOR56B1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR56B1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR56B1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR56B1
DgiDB (Drug Gene Interaction Database)OR56B1
DoCM (Curated mutations)OR56B1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR56B1 (select a term)
intoGenOR56B1
Cancer3DOR56B1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR56B1
Genetic Testing Registry OR56B1
NextProtQ8NGI3 [Medical]
TSGene387748
GENETestsOR56B1
Huge Navigator OR56B1 [HugePedia]
snp3D : Map Gene to Disease387748
BioCentury BCIQOR56B1
ClinGenOR56B1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387748
Chemical/Pharm GKB GenePA32450
Clinical trialOR56B1
Miscellaneous
canSAR (ICR)OR56B1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR56B1
EVEXOR56B1
GoPubMedOR56B1
iHOPOR56B1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:54 CET 2017

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