Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR56B4 (olfactory receptor, family 56, subfamily B, member 4)

Identity

Alias_namesolfactory receptor, family 56, subfamily B, member 4
Other aliasOR11-67
HGNC (Hugo) OR56B4
LocusID (NCBI) 196335
Atlas_Id 71404
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 6128914 and ends at 6130065 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR56B4   15248
Cards
Entrez_Gene (NCBI)OR56B4  196335  olfactory receptor, family 56, subfamily B, member 4
AliasesOR11-67
GeneCards (Weizmann)OR56B4
Ensembl hg19 (Hinxton)ENSG00000180919 [Gene_View]  chr11:6128914-6130065 [Contig_View]  OR56B4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000180919 [Gene_View]  chr11:6128914-6130065 [Contig_View]  OR56B4 [Vega]
ICGC DataPortalENSG00000180919
TCGA cBioPortalOR56B4
AceView (NCBI)OR56B4
Genatlas (Paris)OR56B4
WikiGenes196335
SOURCE (Princeton)OR56B4
Genetics Home Reference (NIH)OR56B4
Genomic and cartography
GoldenPath hg19 (UCSC)OR56B4  -     chr11:6128914-6130065 +  11p15.4   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR56B4  -     11p15.4   [Description]    (hg38-Dec_2013)
EnsemblOR56B4 - 11p15.4 [CytoView hg19]  OR56B4 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR56B4 [Mapview hg19]  OR56B4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136879 BC136880
RefSeq transcript (Entrez)NM_001005181
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)OR56B4
Cluster EST : UnigeneHs.632154 [ NCBI ]
CGAP (NCI)Hs.632154
Alternative Splicing GalleryENSG00000180919
Gene ExpressionOR56B4 [ NCBI-GEO ]   OR56B4 [ EBI - ARRAY_EXPRESS ]   OR56B4 [ SEEK ]   OR56B4 [ MEM ]
Gene Expression Viewer (FireBrowse)OR56B4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)196335
GTEX Portal (Tissue expression)OR56B4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH76   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH76  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH76
Splice isoforms : SwissVarQ8NH76
PhosPhoSitePlusQ8NH76
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)7TM_GPCR_olfarory/Srsx    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7TM_GPCR_Srsx (PF10320)   
Domain families : Pfam (NCBI)pfam10320   
Conserved Domain (NCBI)OR56B4
DMDM Disease mutations196335
Blocks (Seattle)OR56B4
SuperfamilyQ8NH76
Human Protein AtlasENSG00000180919
Peptide AtlasQ8NH76
HPRD15027
IPIIPI00169194   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH76
IntAct (EBI)Q8NH76
FunCoupENSG00000180919
BioGRIDOR56B4
STRING (EMBL)OR56B4
ZODIACOR56B4
Ontologies - Pathways
QuickGOQ8NH76
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR56B4
Atlas of Cancer Signalling NetworkOR56B4
Wikipedia pathwaysOR56B4
Orthology - Evolution
OrthoDB196335
GeneTree (enSembl)ENSG00000180919
Phylogenetic Trees/Animal Genes : TreeFamOR56B4
HOVERGENQ8NH76
HOGENOMQ8NH76
Homologs : HomoloGeneOR56B4
Homology/Alignments : Family Browser (UCSC)OR56B4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR56B4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR56B4
dbVarOR56B4
ClinVarOR56B4
1000_GenomesOR56B4 
Exome Variant ServerOR56B4
ExAC (Exome Aggregation Consortium)OR56B4 (select the gene name)
Genetic variants : HAPMAP196335
Genomic Variants (DGV)OR56B4 [DGVbeta]
DECIPHER (Syndromes)11:6128914-6130065  ENSG00000180919
CONAN: Copy Number AnalysisOR56B4 
Mutations
ICGC Data PortalOR56B4 
TCGA Data PortalOR56B4 
Broad Tumor PortalOR56B4
OASIS PortalOR56B4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR56B4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR56B4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR56B4
DgiDB (Drug Gene Interaction Database)OR56B4
DoCM (Curated mutations)OR56B4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR56B4 (select a term)
intoGenOR56B4
Cancer3DOR56B4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR56B4
Genetic Testing Registry OR56B4
NextProtQ8NH76 [Medical]
TSGene196335
GENETestsOR56B4
Huge Navigator OR56B4 [HugePedia]
snp3D : Map Gene to Disease196335
BioCentury BCIQOR56B4
ClinGenOR56B4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD196335
Chemical/Pharm GKB GenePA32453
Clinical trialOR56B4
Miscellaneous
canSAR (ICR)OR56B4 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR56B4
EVEXOR56B4
GoPubMedOR56B4
iHOPOR56B4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:36:54 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.