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OR5A1 (olfactory receptor family 5 subfamily A member 1)

Identity

Alias_namesOR5A1P
olfactory receptor, family 5, subfamily A, member 1
Alias_symbol (synonym)OST181
Other aliasOR11-249
HGNC (Hugo) OR5A1
LocusID (NCBI) 219982
Atlas_Id 71405
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 59443169 and ends at 59444116 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5A1   8319
Cards
Entrez_Gene (NCBI)OR5A1  219982  olfactory receptor family 5 subfamily A member 1
AliasesOR11-249; OR5A1P; OST181
GeneCards (Weizmann)OR5A1
Ensembl hg19 (Hinxton)ENSG00000172320 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172320 [Gene_View]  chr11:59443169-59444116 [Contig_View]  OR5A1 [Vega]
ICGC DataPortalENSG00000172320
TCGA cBioPortalOR5A1
AceView (NCBI)OR5A1
Genatlas (Paris)OR5A1
WikiGenes219982
SOURCE (Princeton)OR5A1
Genetics Home Reference (NIH)OR5A1
Genomic and cartography
GoldenPath hg38 (UCSC)OR5A1  -     chr11:59443169-59444116 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5A1  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR5A1 - 11q12.1 [CytoView hg19]  OR5A1 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR5A1 [Mapview hg19]  OR5A1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137060 BC137061
RefSeq transcript (Entrez)NM_001004728
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5A1
Cluster EST : UnigeneHs.553649 [ NCBI ]
CGAP (NCI)Hs.553649
Alternative Splicing GalleryENSG00000172320
Gene ExpressionOR5A1 [ NCBI-GEO ]   OR5A1 [ EBI - ARRAY_EXPRESS ]   OR5A1 [ SEEK ]   OR5A1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219982
GTEX Portal (Tissue expression)OR5A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGJ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGJ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGJ0
Splice isoforms : SwissVarQ8NGJ0
PhosPhoSitePlusQ8NGJ0
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5A1
DMDM Disease mutations219982
Blocks (Seattle)OR5A1
SuperfamilyQ8NGJ0
Human Protein AtlasENSG00000172320
Peptide AtlasQ8NGJ0
HPRD15028
IPIIPI00169032   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGJ0
IntAct (EBI)Q8NGJ0
FunCoupENSG00000172320
BioGRIDOR5A1
STRING (EMBL)OR5A1
ZODIACOR5A1
Ontologies - Pathways
QuickGOQ8NGJ0
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5A1
Atlas of Cancer Signalling NetworkOR5A1
Wikipedia pathwaysOR5A1
Orthology - Evolution
OrthoDB219982
GeneTree (enSembl)ENSG00000172320
Phylogenetic Trees/Animal Genes : TreeFamOR5A1
HOVERGENQ8NGJ0
HOGENOMQ8NGJ0
Homologs : HomoloGeneOR5A1
Homology/Alignments : Family Browser (UCSC)OR5A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5A1
dbVarOR5A1
ClinVarOR5A1
1000_GenomesOR5A1 
Exome Variant ServerOR5A1
ExAC (Exome Aggregation Consortium)OR5A1 (select the gene name)
Genetic variants : HAPMAP219982
Genomic Variants (DGV)OR5A1 [DGVbeta]
DECIPHEROR5A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5A1 
Mutations
ICGC Data PortalOR5A1 
TCGA Data PortalOR5A1 
Broad Tumor PortalOR5A1
OASIS PortalOR5A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5A1
DgiDB (Drug Gene Interaction Database)OR5A1
DoCM (Curated mutations)OR5A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5A1 (select a term)
intoGenOR5A1
Cancer3DOR5A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5A1
Genetic Testing Registry OR5A1
NextProtQ8NGJ0 [Medical]
TSGene219982
GENETestsOR5A1
Target ValidationOR5A1
Huge Navigator OR5A1 [HugePedia]
snp3D : Map Gene to Disease219982
BioCentury BCIQOR5A1
ClinGenOR5A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219982
Chemical/Pharm GKB GenePA32454
Clinical trialOR5A1
Miscellaneous
canSAR (ICR)OR5A1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5A1
EVEXOR5A1
GoPubMedOR5A1
iHOPOR5A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:21 CEST 2017

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