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OR5A2 (olfactory receptor, family 5, subfamily A, member 2)

Identity

Alias_namesolfactory receptor, family 5, subfamily A, member 2
Other alias-
HGNC (Hugo) OR5A2
LocusID (NCBI) 219981
Atlas_Id 71406
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 59189452 and ends at 59190426 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5A2   15249
Cards
Entrez_Gene (NCBI)OR5A2  219981  olfactory receptor, family 5, subfamily A, member 2
Aliases
GeneCards (Weizmann)OR5A2
Ensembl hg19 (Hinxton)ENSG00000172324 [Gene_View]  chr11:59189452-59190426 [Contig_View]  OR5A2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000172324 [Gene_View]  chr11:59189452-59190426 [Contig_View]  OR5A2 [Vega]
ICGC DataPortalENSG00000172324
TCGA cBioPortalOR5A2
AceView (NCBI)OR5A2
Genatlas (Paris)OR5A2
WikiGenes219981
SOURCE (Princeton)OR5A2
Genetics Home Reference (NIH)OR5A2
Genomic and cartography
GoldenPath hg19 (UCSC)OR5A2  -     chr11:59189452-59190426 -  11q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR5A2  -     11q12.1   [Description]    (hg38-Dec_2013)
EnsemblOR5A2 - 11q12.1 [CytoView hg19]  OR5A2 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR5A2 [Mapview hg19]  OR5A2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136991
RefSeq transcript (Entrez)NM_001001954
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)OR5A2
Cluster EST : UnigeneHs.553648 [ NCBI ]
CGAP (NCI)Hs.553648
Alternative Splicing GalleryENSG00000172324
Gene ExpressionOR5A2 [ NCBI-GEO ]   OR5A2 [ EBI - ARRAY_EXPRESS ]   OR5A2 [ SEEK ]   OR5A2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219981
GTEX Portal (Tissue expression)OR5A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGI9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGI9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGI9
Splice isoforms : SwissVarQ8NGI9
PhosPhoSitePlusQ8NGI9
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5A2
DMDM Disease mutations219981
Blocks (Seattle)OR5A2
SuperfamilyQ8NGI9
Human Protein AtlasENSG00000172324
Peptide AtlasQ8NGI9
HPRD15029
IPIIPI00303451   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGI9
IntAct (EBI)Q8NGI9
FunCoupENSG00000172324
BioGRIDOR5A2
STRING (EMBL)OR5A2
ZODIACOR5A2
Ontologies - Pathways
QuickGOQ8NGI9
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5A2
Atlas of Cancer Signalling NetworkOR5A2
Wikipedia pathwaysOR5A2
Orthology - Evolution
OrthoDB219981
GeneTree (enSembl)ENSG00000172324
Phylogenetic Trees/Animal Genes : TreeFamOR5A2
HOVERGENQ8NGI9
HOGENOMQ8NGI9
Homologs : HomoloGeneOR5A2
Homology/Alignments : Family Browser (UCSC)OR5A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5A2
dbVarOR5A2
ClinVarOR5A2
1000_GenomesOR5A2 
Exome Variant ServerOR5A2
ExAC (Exome Aggregation Consortium)OR5A2 (select the gene name)
Genetic variants : HAPMAP219981
Genomic Variants (DGV)OR5A2 [DGVbeta]
DECIPHER (Syndromes)11:59189452-59190426  ENSG00000172324
CONAN: Copy Number AnalysisOR5A2 
Mutations
ICGC Data PortalOR5A2 
TCGA Data PortalOR5A2 
Broad Tumor PortalOR5A2
OASIS PortalOR5A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5A2
DgiDB (Drug Gene Interaction Database)OR5A2
DoCM (Curated mutations)OR5A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5A2 (select a term)
intoGenOR5A2
Cancer3DOR5A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5A2
Genetic Testing Registry OR5A2
NextProtQ8NGI9 [Medical]
TSGene219981
GENETestsOR5A2
Huge Navigator OR5A2 [HugePedia]
snp3D : Map Gene to Disease219981
BioCentury BCIQOR5A2
ClinGenOR5A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219981
Chemical/Pharm GKB GenePA32455
Clinical trialOR5A2
Miscellaneous
canSAR (ICR)OR5A2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5A2
EVEXOR5A2
GoPubMedOR5A2
iHOPOR5A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:54 CET 2017

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