Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR5AC2 (olfactory receptor family 5 subfamily AC member 2)

Identity

Alias_namesolfactory receptor, family 5, subfamily AC, member 2
Alias_symbol (synonym)HSA1
Other alias
HGNC (Hugo) OR5AC2
LocusID (NCBI) 81050
Atlas_Id 71407
Location 3q11.2  [Link to chromosome band 3q11]
Location_base_pair Starts at 98087173 and ends at 98088102 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5AC2   15431
Cards
Entrez_Gene (NCBI)OR5AC2  81050  olfactory receptor family 5 subfamily AC member 2
AliasesHSA1
GeneCards (Weizmann)OR5AC2
Ensembl hg19 (Hinxton)ENSG00000196578 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196578 [Gene_View]  chr3:98087173-98088102 [Contig_View]  OR5AC2 [Vega]
ICGC DataPortalENSG00000196578
TCGA cBioPortalOR5AC2
AceView (NCBI)OR5AC2
Genatlas (Paris)OR5AC2
WikiGenes81050
SOURCE (Princeton)OR5AC2
Genetics Home Reference (NIH)OR5AC2
Genomic and cartography
GoldenPath hg38 (UCSC)OR5AC2  -     chr3:98087173-98088102 +  3q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5AC2  -     3q11.2   [Description]    (hg19-Feb_2009)
EnsemblOR5AC2 - 3q11.2 [CytoView hg19]  OR5AC2 - 3q11.2 [CytoView hg38]
Mapping of homologs : NCBIOR5AC2 [Mapview hg19]  OR5AC2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC148625 BC153189
RefSeq transcript (Entrez)NM_054106
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5AC2
Cluster EST : UnigeneHs.554715 [ NCBI ]
CGAP (NCI)Hs.554715
Alternative Splicing GalleryENSG00000196578
Gene ExpressionOR5AC2 [ NCBI-GEO ]   OR5AC2 [ EBI - ARRAY_EXPRESS ]   OR5AC2 [ SEEK ]   OR5AC2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5AC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81050
GTEX Portal (Tissue expression)OR5AC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZP5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZP5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZP5
Splice isoforms : SwissVarQ9NZP5
PhosPhoSitePlusQ9NZP5
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5AC2
DMDM Disease mutations81050
Blocks (Seattle)OR5AC2
SuperfamilyQ9NZP5
Human Protein AtlasENSG00000196578
Peptide AtlasQ9NZP5
HPRD15030
IPIIPI00464966   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZP5
IntAct (EBI)Q9NZP5
FunCoupENSG00000196578
BioGRIDOR5AC2
STRING (EMBL)OR5AC2
ZODIACOR5AC2
Ontologies - Pathways
QuickGOQ9NZP5
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5AC2
Atlas of Cancer Signalling NetworkOR5AC2
Wikipedia pathwaysOR5AC2
Orthology - Evolution
OrthoDB81050
GeneTree (enSembl)ENSG00000196578
Phylogenetic Trees/Animal Genes : TreeFamOR5AC2
HOVERGENQ9NZP5
HOGENOMQ9NZP5
Homologs : HomoloGeneOR5AC2
Homology/Alignments : Family Browser (UCSC)OR5AC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5AC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5AC2
dbVarOR5AC2
ClinVarOR5AC2
1000_GenomesOR5AC2 
Exome Variant ServerOR5AC2
ExAC (Exome Aggregation Consortium)OR5AC2 (select the gene name)
Genetic variants : HAPMAP81050
Genomic Variants (DGV)OR5AC2 [DGVbeta]
DECIPHEROR5AC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5AC2 
Mutations
ICGC Data PortalOR5AC2 
TCGA Data PortalOR5AC2 
Broad Tumor PortalOR5AC2
OASIS PortalOR5AC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5AC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5AC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5AC2
DgiDB (Drug Gene Interaction Database)OR5AC2
DoCM (Curated mutations)OR5AC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5AC2 (select a term)
intoGenOR5AC2
Cancer3DOR5AC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5AC2
Genetic Testing Registry OR5AC2
NextProtQ9NZP5 [Medical]
TSGene81050
GENETestsOR5AC2
Target ValidationOR5AC2
Huge Navigator OR5AC2 [HugePedia]
snp3D : Map Gene to Disease81050
BioCentury BCIQOR5AC2
ClinGenOR5AC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81050
Chemical/Pharm GKB GenePA32457
Clinical trialOR5AC2
Miscellaneous
canSAR (ICR)OR5AC2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5AC2
EVEXOR5AC2
GoPubMedOR5AC2
iHOPOR5AC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:33:22 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.