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OR5AL1 (olfactory receptor family 5 subfamily AL member 1 (gene/pseudogene))

Identity

Alias (NCBI)OR5AL1P
HGNC (Hugo) OR5AL1
HGNC Previous nameOR5AL1P
HGNC Previous nameolfactory receptor, family 5, subfamily AL, member 1 pseudogene
 olfactory receptor, family 5, subfamily AL, member 1 (gene/pseudogene)
LocusID (NCBI) 79482
Atlas_Id 80116
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 56412597 and ends at 56413781 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OR5AL1   14844
Cards
Entrez_Gene (NCBI)OR5AL1    olfactory receptor family 5 subfamily AL member 1 (gene/pseudogene)
AliasesOR5AL1P
GeneCards (Weizmann)OR5AL1
Ensembl hg19 (Hinxton)ENSG00000272987 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000272987 [Gene_View]  ENSG00000272987 [Sequence]  chr11:56412597-56413781 [Contig_View]  OR5AL1 [Vega]
ICGC DataPortalENSG00000272987
TCGA cBioPortalOR5AL1
AceView (NCBI)OR5AL1
Genatlas (Paris)OR5AL1
SOURCE (Princeton)OR5AL1
Genetics Home Reference (NIH)OR5AL1
Genomic and cartography
GoldenPath hg38 (UCSC)OR5AL1  -     chr11:56412597-56413781 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5AL1  -     11q12.1   [Description]    (hg19-Feb_2009)
GoldenPathOR5AL1 - 11q12.1 [CytoView hg19]  OR5AL1 - 11q12.1 [CytoView hg38]
ImmunoBaseENSG00000272987
genome Data Viewer NCBIOR5AL1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001348230
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5AL1
Alternative Splicing GalleryENSG00000272987
Gene ExpressionOR5AL1 [ NCBI-GEO ]   OR5AL1 [ EBI - ARRAY_EXPRESS ]   OR5AL1 [ SEEK ]   OR5AL1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5AL1 [ Firebrowse - Broad ]
GenevisibleExpression of OR5AL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79482
GTEX Portal (Tissue expression)OR5AL1
Human Protein AtlasENSG00000272987-OR5AL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C617   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C617  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C617
Splice isoforms : SwissVarP0C617
PhosPhoSitePlusP0C617
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR5AL1
Blocks (Seattle)OR5AL1
SuperfamilyP0C617
Human Protein Atlas [tissue]ENSG00000272987-OR5AL1 [tissue]
Peptide AtlasP0C617
IPIIPI00877959   
Protein Interaction databases
DIP (DOE-UCLA)P0C617
IntAct (EBI)P0C617
BioGRIDOR5AL1
STRING (EMBL)OR5AL1
ZODIACOR5AL1
Ontologies - Pathways
QuickGOP0C617
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G protein-coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G protein-coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR5AL1
Atlas of Cancer Signalling NetworkOR5AL1
Wikipedia pathwaysOR5AL1
Orthology - Evolution
OrthoDB79482
GeneTree (enSembl)ENSG00000272987
Phylogenetic Trees/Animal Genes : TreeFamOR5AL1
HOGENOMP0C617
Homologs : HomoloGeneOR5AL1
Homology/Alignments : Family Browser (UCSC)OR5AL1
Gene fusions - Rearrangements
Fusion : QuiverOR5AL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5AL1 [hg38]
dbVarOR5AL1
ClinVarOR5AL1
MonarchOR5AL1
1000_GenomesOR5AL1 
Exome Variant ServerOR5AL1
GNOMAD BrowserENSG00000272987
Varsome BrowserOR5AL1
Genomic Variants (DGV)OR5AL1 [DGVbeta]
DECIPHEROR5AL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5AL1 
Mutations
ICGC Data PortalOR5AL1 
TCGA Data PortalOR5AL1 
Broad Tumor PortalOR5AL1
OASIS PortalOR5AL1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOR5AL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5AL1
DgiDB (Drug Gene Interaction Database)OR5AL1
DoCM (Curated mutations)OR5AL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5AL1 (select a term)
intoGenOR5AL1
Cancer3DOR5AL1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR5AL1
MedgenOR5AL1
Genetic Testing Registry OR5AL1
NextProtP0C617 [Medical]
GENETestsOR5AL1
Target ValidationOR5AL1
Huge Navigator OR5AL1 [HugePedia]
ClinGenOR5AL1
Clinical trials, drugs, therapy
MyCancerGenomeOR5AL1
Protein Interactions : CTD
Pharm GKB GenePA32463
Clinical trialOR5AL1
Miscellaneous
canSAR (ICR)OR5AL1 (select the gene name)
HarmonizomeOR5AL1
DataMed IndexOR5AL1
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5AL1
EVEXOR5AL1
GoPubMedOR5AL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:21:00 CET 2020
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