Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR5AP2 (olfactory receptor, family 5, subfamily AP, member 2)

Identity

Alias_namesolfactory receptor, family 5, subfamily AP, member 2
Other aliasOR9J1
HGNC (Hugo) OR5AP2
LocusID (NCBI) 338675
Atlas_Id 71411
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 56408965 and ends at 56409915 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5AP2   15258
Cards
Entrez_Gene (NCBI)OR5AP2  338675  olfactory receptor, family 5, subfamily AP, member 2
AliasesOR9J1
GeneCards (Weizmann)OR5AP2
Ensembl hg19 (Hinxton)ENSG00000172464 [Gene_View]  chr11:56408965-56409915 [Contig_View]  OR5AP2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000172464 [Gene_View]  chr11:56408965-56409915 [Contig_View]  OR5AP2 [Vega]
ICGC DataPortalENSG00000172464
TCGA cBioPortalOR5AP2
AceView (NCBI)OR5AP2
Genatlas (Paris)OR5AP2
WikiGenes338675
SOURCE (Princeton)OR5AP2
Genetics Home Reference (NIH)OR5AP2
Genomic and cartography
GoldenPath hg19 (UCSC)OR5AP2  -     chr11:56408965-56409915 -  11q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR5AP2  -     11q12.1   [Description]    (hg38-Dec_2013)
EnsemblOR5AP2 - 11q12.1 [CytoView hg19]  OR5AP2 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR5AP2 [Mapview hg19]  OR5AP2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136989 BC136990
RefSeq transcript (Entrez)NM_001002925
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)OR5AP2
Cluster EST : UnigeneHs.449692 [ NCBI ]
CGAP (NCI)Hs.449692
Alternative Splicing GalleryENSG00000172464
Gene ExpressionOR5AP2 [ NCBI-GEO ]   OR5AP2 [ EBI - ARRAY_EXPRESS ]   OR5AP2 [ SEEK ]   OR5AP2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5AP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338675
GTEX Portal (Tissue expression)OR5AP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGF4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGF4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGF4
Splice isoforms : SwissVarQ8NGF4
PhosPhoSitePlusQ8NGF4
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5AP2
DMDM Disease mutations338675
Blocks (Seattle)OR5AP2
SuperfamilyQ8NGF4
Human Protein AtlasENSG00000172464
Peptide AtlasQ8NGF4
HPRD17749
IPIIPI01013000   IPI00169000   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGF4
IntAct (EBI)Q8NGF4
FunCoupENSG00000172464
BioGRIDOR5AP2
STRING (EMBL)OR5AP2
ZODIACOR5AP2
Ontologies - Pathways
QuickGOQ8NGF4
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5AP2
Atlas of Cancer Signalling NetworkOR5AP2
Wikipedia pathwaysOR5AP2
Orthology - Evolution
OrthoDB338675
GeneTree (enSembl)ENSG00000172464
Phylogenetic Trees/Animal Genes : TreeFamOR5AP2
HOVERGENQ8NGF4
HOGENOMQ8NGF4
Homologs : HomoloGeneOR5AP2
Homology/Alignments : Family Browser (UCSC)OR5AP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5AP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5AP2
dbVarOR5AP2
ClinVarOR5AP2
1000_GenomesOR5AP2 
Exome Variant ServerOR5AP2
ExAC (Exome Aggregation Consortium)OR5AP2 (select the gene name)
Genetic variants : HAPMAP338675
Genomic Variants (DGV)OR5AP2 [DGVbeta]
DECIPHER (Syndromes)11:56408965-56409915  ENSG00000172464
CONAN: Copy Number AnalysisOR5AP2 
Mutations
ICGC Data PortalOR5AP2 
TCGA Data PortalOR5AP2 
Broad Tumor PortalOR5AP2
OASIS PortalOR5AP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5AP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5AP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5AP2
DgiDB (Drug Gene Interaction Database)OR5AP2
DoCM (Curated mutations)OR5AP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5AP2 (select a term)
intoGenOR5AP2
Cancer3DOR5AP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5AP2
Genetic Testing Registry OR5AP2
NextProtQ8NGF4 [Medical]
TSGene338675
GENETestsOR5AP2
Huge Navigator OR5AP2 [HugePedia]
snp3D : Map Gene to Disease338675
BioCentury BCIQOR5AP2
ClinGenOR5AP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338675
Chemical/Pharm GKB GenePA32469
Clinical trialOR5AP2
Miscellaneous
canSAR (ICR)OR5AP2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5AP2
EVEXOR5AP2
GoPubMedOR5AP2
iHOPOR5AP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:36:55 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.