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OR5AR1 (olfactory receptor family 5 subfamily AR member 1 (gene/pseudogene))

Identity

Alias (NCBI)OR11-209
HGNC (Hugo) OR5AR1
HGNC Previous nameolfactory receptor, family 5, subfamily AR, member 1
 olfactory receptor, family 5, subfamily AR, member 1 (gene/pseudogene)
LocusID (NCBI) 219493
Atlas_Id 71412
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 56663686 and ends at 56664618 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)OR5AR1   15260
Cards
Entrez_Gene (NCBI)OR5AR1    olfactory receptor family 5 subfamily AR member 1 (gene/pseudogene)
AliasesOR11-209
GeneCards (Weizmann)OR5AR1
Ensembl hg19 (Hinxton)ENSG00000172459 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172459 [Gene_View]  ENSG00000172459 [Sequence]  chr11:56663686-56664618 [Contig_View]  OR5AR1 [Vega]
ICGC DataPortalENSG00000172459
TCGA cBioPortalOR5AR1
AceView (NCBI)OR5AR1
Genatlas (Paris)OR5AR1
SOURCE (Princeton)OR5AR1
Genetics Home Reference (NIH)OR5AR1
Genomic and cartography
GoldenPath hg38 (UCSC)OR5AR1  -     chr11:56663686-56664618 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5AR1  -     11q12.1   [Description]    (hg19-Feb_2009)
GoldenPathOR5AR1 - 11q12.1 [CytoView hg19]  OR5AR1 - 11q12.1 [CytoView hg38]
ImmunoBaseENSG00000172459
genome Data Viewer NCBIOR5AR1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC140745
RefSeq transcript (Entrez)NM_001004730
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5AR1
Alternative Splicing GalleryENSG00000172459
Gene ExpressionOR5AR1 [ NCBI-GEO ]   OR5AR1 [ EBI - ARRAY_EXPRESS ]   OR5AR1 [ SEEK ]   OR5AR1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5AR1 [ Firebrowse - Broad ]
GenevisibleExpression of OR5AR1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219493
GTEX Portal (Tissue expression)OR5AR1
Human Protein AtlasENSG00000172459-OR5AR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGP9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGP9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGP9
Splice isoforms : SwissVarQ8NGP9
PhosPhoSitePlusQ8NGP9
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR5AR1
Blocks (Seattle)OR5AR1
SuperfamilyQ8NGP9
Human Protein Atlas [tissue]ENSG00000172459-OR5AR1 [tissue]
Peptide AtlasQ8NGP9
HPRD17750
IPIIPI00169081   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGP9
IntAct (EBI)Q8NGP9
BioGRIDOR5AR1
STRING (EMBL)OR5AR1
ZODIACOR5AR1
Ontologies - Pathways
QuickGOQ8NGP9
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  copper ion binding  odorant binding  plasma membrane  integral component of plasma membrane  G protein-coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  copper ion binding  odorant binding  plasma membrane  integral component of plasma membrane  G protein-coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR5AR1
Atlas of Cancer Signalling NetworkOR5AR1
Wikipedia pathwaysOR5AR1
Orthology - Evolution
OrthoDB219493
GeneTree (enSembl)ENSG00000172459
Phylogenetic Trees/Animal Genes : TreeFamOR5AR1
HOGENOMQ8NGP9
Homologs : HomoloGeneOR5AR1
Homology/Alignments : Family Browser (UCSC)OR5AR1
Gene fusions - Rearrangements
Fusion : QuiverOR5AR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5AR1 [hg38]
dbVarOR5AR1
ClinVarOR5AR1
MonarchOR5AR1
1000_GenomesOR5AR1 
Exome Variant ServerOR5AR1
GNOMAD BrowserENSG00000172459
Varsome BrowserOR5AR1
Genomic Variants (DGV)OR5AR1 [DGVbeta]
DECIPHEROR5AR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5AR1 
Mutations
ICGC Data PortalOR5AR1 
TCGA Data PortalOR5AR1 
Broad Tumor PortalOR5AR1
OASIS PortalOR5AR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5AR1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOR5AR1
Mutations and Diseases : HGMDOR5AR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5AR1
DgiDB (Drug Gene Interaction Database)OR5AR1
DoCM (Curated mutations)OR5AR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5AR1 (select a term)
intoGenOR5AR1
Cancer3DOR5AR1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR5AR1
MedgenOR5AR1
Genetic Testing Registry OR5AR1
NextProtQ8NGP9 [Medical]
GENETestsOR5AR1
Target ValidationOR5AR1
Huge Navigator OR5AR1 [HugePedia]
ClinGenOR5AR1
Clinical trials, drugs, therapy
MyCancerGenomeOR5AR1
Protein Interactions : CTD
Pharm GKB GenePA32471
Clinical trialOR5AR1
Miscellaneous
canSAR (ICR)OR5AR1 (select the gene name)
HarmonizomeOR5AR1
DataMed IndexOR5AR1
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5AR1
EVEXOR5AR1
GoPubMedOR5AR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:21:01 CET 2020

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