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OR5AR1 (olfactory receptor family 5 subfamily AR member 1 (gene/pseudogene))

Identity

Alias_namesolfactory receptor, family 5, subfamily AR, member 1
olfactory receptor, family 5, subfamily AR, member 1 (gene/pseudogene)
Other aliasOR11-209
HGNC (Hugo) OR5AR1
LocusID (NCBI) 219493
Atlas_Id 71412
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 56663686 and ends at 56664618 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5AR1   15260
Cards
Entrez_Gene (NCBI)OR5AR1  219493  olfactory receptor family 5 subfamily AR member 1 (gene/pseudogene)
AliasesOR11-209
GeneCards (Weizmann)OR5AR1
Ensembl hg19 (Hinxton)ENSG00000172459 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172459 [Gene_View]  chr11:56663686-56664618 [Contig_View]  OR5AR1 [Vega]
ICGC DataPortalENSG00000172459
TCGA cBioPortalOR5AR1
AceView (NCBI)OR5AR1
Genatlas (Paris)OR5AR1
WikiGenes219493
SOURCE (Princeton)OR5AR1
Genetics Home Reference (NIH)OR5AR1
Genomic and cartography
GoldenPath hg38 (UCSC)OR5AR1  -     chr11:56663686-56664618 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5AR1  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR5AR1 - 11q12.1 [CytoView hg19]  OR5AR1 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR5AR1 [Mapview hg19]  OR5AR1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC140745
RefSeq transcript (Entrez)NM_001004730
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5AR1
Cluster EST : UnigeneHs.553633 [ NCBI ]
CGAP (NCI)Hs.553633
Alternative Splicing GalleryENSG00000172459
Gene ExpressionOR5AR1 [ NCBI-GEO ]   OR5AR1 [ EBI - ARRAY_EXPRESS ]   OR5AR1 [ SEEK ]   OR5AR1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5AR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219493
GTEX Portal (Tissue expression)OR5AR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGP9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGP9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGP9
Splice isoforms : SwissVarQ8NGP9
PhosPhoSitePlusQ8NGP9
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5AR1
DMDM Disease mutations219493
Blocks (Seattle)OR5AR1
SuperfamilyQ8NGP9
Human Protein AtlasENSG00000172459
Peptide AtlasQ8NGP9
HPRD17750
IPIIPI00169081   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGP9
IntAct (EBI)Q8NGP9
FunCoupENSG00000172459
BioGRIDOR5AR1
STRING (EMBL)OR5AR1
ZODIACOR5AR1
Ontologies - Pathways
QuickGOQ8NGP9
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5AR1
Atlas of Cancer Signalling NetworkOR5AR1
Wikipedia pathwaysOR5AR1
Orthology - Evolution
OrthoDB219493
GeneTree (enSembl)ENSG00000172459
Phylogenetic Trees/Animal Genes : TreeFamOR5AR1
HOVERGENQ8NGP9
HOGENOMQ8NGP9
Homologs : HomoloGeneOR5AR1
Homology/Alignments : Family Browser (UCSC)OR5AR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5AR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5AR1
dbVarOR5AR1
ClinVarOR5AR1
1000_GenomesOR5AR1 
Exome Variant ServerOR5AR1
ExAC (Exome Aggregation Consortium)OR5AR1 (select the gene name)
Genetic variants : HAPMAP219493
Genomic Variants (DGV)OR5AR1 [DGVbeta]
DECIPHEROR5AR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5AR1 
Mutations
ICGC Data PortalOR5AR1 
TCGA Data PortalOR5AR1 
Broad Tumor PortalOR5AR1
OASIS PortalOR5AR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5AR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5AR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5AR1
DgiDB (Drug Gene Interaction Database)OR5AR1
DoCM (Curated mutations)OR5AR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5AR1 (select a term)
intoGenOR5AR1
Cancer3DOR5AR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5AR1
Genetic Testing Registry OR5AR1
NextProtQ8NGP9 [Medical]
TSGene219493
GENETestsOR5AR1
Target ValidationOR5AR1
Huge Navigator OR5AR1 [HugePedia]
snp3D : Map Gene to Disease219493
BioCentury BCIQOR5AR1
ClinGenOR5AR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219493
Chemical/Pharm GKB GenePA32471
Clinical trialOR5AR1
Miscellaneous
canSAR (ICR)OR5AR1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5AR1
EVEXOR5AR1
GoPubMedOR5AR1
iHOPOR5AR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:34:40 CEST 2017

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