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OR5AS1 (olfactory receptor family 5 subfamily AS member 1)

Identity

Alias_namesolfactory receptor, family 5, subfamily AS, member 1
Other aliasOR11-168
HGNC (Hugo) OR5AS1
LocusID (NCBI) 219447
Atlas_Id 71413
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 56030419 and ends at 56031393 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5AS1   15261
Cards
Entrez_Gene (NCBI)OR5AS1  219447  olfactory receptor family 5 subfamily AS member 1
AliasesOR11-168
GeneCards (Weizmann)OR5AS1
Ensembl hg19 (Hinxton)ENSG00000181785 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181785 [Gene_View]  chr11:56030419-56031393 [Contig_View]  OR5AS1 [Vega]
ICGC DataPortalENSG00000181785
TCGA cBioPortalOR5AS1
AceView (NCBI)OR5AS1
Genatlas (Paris)OR5AS1
WikiGenes219447
SOURCE (Princeton)OR5AS1
Genetics Home Reference (NIH)OR5AS1
Genomic and cartography
GoldenPath hg38 (UCSC)OR5AS1  -     chr11:56030419-56031393 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5AS1  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR5AS1 - 11q12.1 [CytoView hg19]  OR5AS1 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR5AS1 [Mapview hg19]  OR5AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001001921
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5AS1
Cluster EST : UnigeneHs.553625 [ NCBI ]
CGAP (NCI)Hs.553625
Alternative Splicing GalleryENSG00000181785
Gene ExpressionOR5AS1 [ NCBI-GEO ]   OR5AS1 [ EBI - ARRAY_EXPRESS ]   OR5AS1 [ SEEK ]   OR5AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219447
GTEX Portal (Tissue expression)OR5AS1
Human Protein AtlasENSG00000181785-OR5AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N127   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N127  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N127
Splice isoforms : SwissVarQ8N127
PhosPhoSitePlusQ8N127
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5AS1
DMDM Disease mutations219447
Blocks (Seattle)OR5AS1
SuperfamilyQ8N127
Human Protein Atlas [tissue]ENSG00000181785-OR5AS1 [tissue]
Peptide AtlasQ8N127
HPRD17751
IPIIPI00295616   
Protein Interaction databases
DIP (DOE-UCLA)Q8N127
IntAct (EBI)Q8N127
FunCoupENSG00000181785
BioGRIDOR5AS1
STRING (EMBL)OR5AS1
ZODIACOR5AS1
Ontologies - Pathways
QuickGOQ8N127
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  <-font?<'TD>
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5AS1
Atlas of Cancer Signalling NetworkOR5AS1
Wikipedia pathwaysOR5AS1
Orthology - Evolution
OrthoDB219447
GeneTree (enSembl)ENSG00000181785
Phylogenetic Trees/Animal Genes : TreeFamOR5AS1
HOVERGENQ8N127
HOGENOMQ8N127
Homologs : HomoloGeneOR5AS1
Homology/Alignments : Family Browser (UCSC)OR5AS1
Gene fusions - Rearrangements
Fusion: Tumor Portal OR5AS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5AS1
dbVarOR5AS1
ClinVarOR5AS1
1000_GenomesOR5AS1 
Exome Variant ServerOR5AS1
ExAC (Exome Aggregation Consortium)ENSG00000181785
GNOMAD BrowserENSG00000181785
Genetic variants : HAPMAP219447
Genomic Variants (DGV)OR5AS1 [DGVbeta]
DECIPHEROR5AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5AS1 
Mutations
ICGC Data PortalOR5AS1 
TCGA Data PortalOR5AS1 
Broad Tumor PortalOR5AS1
OASIS PortalOR5AS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5AS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5AS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5AS1
DgiDB (Drug Gene Interaction Database)OR5AS1
DoCM (Curated mutations)OR5AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5AS1 (select a term)
intoGenOR5AS1
Cancer3DOR5AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5AS1
Genetic Testing Registry OR5AS1
NextProtQ8N127 [Medical]
TSGene219447
GENETestsOR5AS1
Target ValidationOR5AS1
Huge Navigator OR5AS1 [HugePedia]
snp3D : Map Gene to Disease219447
BioCentury BCIQOR5AS1
ClinGenOR5AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219447
Chemical/Pharm GKB GenePA32472
Clinical trialOR5AS1
Miscellaneous
canSAR (ICR)OR5AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5AS1
EVEXOR5AS1
GoPubMedOR5AS1
iHOPOR5AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:20:54 CET 2017

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