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OR5B12 (olfactory receptor, family 5, subfamily B, member 12)

Identity

Alias_namesOR5B12P
OR5B16
olfactory receptor, family 5, subfamily B, member 12
Alias_symbol (synonym)OST743
Other aliasOR11-241
HGNC (Hugo) OR5B12
LocusID (NCBI) 390191
Atlas_Id 71415
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 58206593 and ends at 58207646 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5B12   15432
Cards
Entrez_Gene (NCBI)OR5B12  390191  olfactory receptor, family 5, subfamily B, member 12
AliasesOR11-241; OR5B12P; OR5B16; OST743
GeneCards (Weizmann)OR5B12
Ensembl hg19 (Hinxton)ENSG00000172362 [Gene_View]  chr11:58206593-58207646 [Contig_View]  OR5B12 [Vega]
Ensembl hg38 (Hinxton)ENSG00000172362 [Gene_View]  chr11:58206593-58207646 [Contig_View]  OR5B12 [Vega]
ICGC DataPortalENSG00000172362
TCGA cBioPortalOR5B12
AceView (NCBI)OR5B12
Genatlas (Paris)OR5B12
WikiGenes390191
SOURCE (Princeton)OR5B12
Genetics Home Reference (NIH)OR5B12
Genomic and cartography
GoldenPath hg19 (UCSC)OR5B12  -     chr11:58206593-58207646 -  11q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR5B12  -     11q12.1   [Description]    (hg38-Dec_2013)
EnsemblOR5B12 - 11q12.1 [CytoView hg19]  OR5B12 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR5B12 [Mapview hg19]  OR5B12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136947 BC136948
RefSeq transcript (Entrez)NM_001004733
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)OR5B12
Cluster EST : UnigeneHs.553754 [ NCBI ]
CGAP (NCI)Hs.553754
Alternative Splicing GalleryENSG00000172362
Gene ExpressionOR5B12 [ NCBI-GEO ]   OR5B12 [ EBI - ARRAY_EXPRESS ]   OR5B12 [ SEEK ]   OR5B12 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5B12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390191
GTEX Portal (Tissue expression)OR5B12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96R08   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96R08  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96R08
Splice isoforms : SwissVarQ96R08
PhosPhoSitePlusQ96R08
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5B12
DMDM Disease mutations390191
Blocks (Seattle)OR5B12
SuperfamilyQ96R08
Human Protein AtlasENSG00000172362
Peptide AtlasQ96R08
HPRD15035
IPIIPI00060337   
Protein Interaction databases
DIP (DOE-UCLA)Q96R08
IntAct (EBI)Q96R08
FunCoupENSG00000172362
BioGRIDOR5B12
STRING (EMBL)OR5B12
ZODIACOR5B12
Ontologies - Pathways
QuickGOQ96R08
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5B12
Atlas of Cancer Signalling NetworkOR5B12
Wikipedia pathwaysOR5B12
Orthology - Evolution
OrthoDB390191
GeneTree (enSembl)ENSG00000172362
Phylogenetic Trees/Animal Genes : TreeFamOR5B12
HOVERGENQ96R08
HOGENOMQ96R08
Homologs : HomoloGeneOR5B12
Homology/Alignments : Family Browser (UCSC)OR5B12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5B12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5B12
dbVarOR5B12
ClinVarOR5B12
1000_GenomesOR5B12 
Exome Variant ServerOR5B12
ExAC (Exome Aggregation Consortium)OR5B12 (select the gene name)
Genetic variants : HAPMAP390191
Genomic Variants (DGV)OR5B12 [DGVbeta]
DECIPHER (Syndromes)11:58206593-58207646  ENSG00000172362
CONAN: Copy Number AnalysisOR5B12 
Mutations
ICGC Data PortalOR5B12 
TCGA Data PortalOR5B12 
Broad Tumor PortalOR5B12
OASIS PortalOR5B12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5B12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5B12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5B12
DgiDB (Drug Gene Interaction Database)OR5B12
DoCM (Curated mutations)OR5B12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5B12 (select a term)
intoGenOR5B12
Cancer3DOR5B12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5B12
Genetic Testing Registry OR5B12
NextProtQ96R08 [Medical]
TSGene390191
GENETestsOR5B12
Huge Navigator OR5B12 [HugePedia]
snp3D : Map Gene to Disease390191
BioCentury BCIQOR5B12
ClinGenOR5B12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390191
Chemical/Pharm GKB GenePA32481
Clinical trialOR5B12
Miscellaneous
canSAR (ICR)OR5B12 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5B12
EVEXOR5B12
GoPubMedOR5B12
iHOPOR5B12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:56 CET 2017

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