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OR5B17 (olfactory receptor family 5 subfamily B member 17)

Identity

Alias_namesOR5B20P
olfactory receptor, family 5, subfamily B, member 17
Other aliasOR11-237
HGNC (Hugo) OR5B17
LocusID (NCBI) 219965
Atlas_Id 71416
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 58358125 and ends at 58359069 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5B17   15267
Cards
Entrez_Gene (NCBI)OR5B17  219965  olfactory receptor family 5 subfamily B member 17
AliasesOR11-237; OR5B20P
GeneCards (Weizmann)OR5B17
Ensembl hg19 (Hinxton)ENSG00000197786 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197786 [Gene_View]  chr11:58358125-58359069 [Contig_View]  OR5B17 [Vega]
ICGC DataPortalENSG00000197786
TCGA cBioPortalOR5B17
AceView (NCBI)OR5B17
Genatlas (Paris)OR5B17
WikiGenes219965
SOURCE (Princeton)OR5B17
Genetics Home Reference (NIH)OR5B17
Genomic and cartography
GoldenPath hg38 (UCSC)OR5B17  -     chr11:58358125-58359069 -  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5B17  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR5B17 - 11q12.1 [CytoView hg19]  OR5B17 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR5B17 [Mapview hg19]  OR5B17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005489
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5B17
Cluster EST : UnigeneHs.554517 [ NCBI ]
CGAP (NCI)Hs.554517
Alternative Splicing GalleryENSG00000197786
Gene ExpressionOR5B17 [ NCBI-GEO ]   OR5B17 [ EBI - ARRAY_EXPRESS ]   OR5B17 [ SEEK ]   OR5B17 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5B17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219965
GTEX Portal (Tissue expression)OR5B17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGF7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGF7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGF7
Splice isoforms : SwissVarQ8NGF7
PhosPhoSitePlusQ8NGF7
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5B17
DMDM Disease mutations219965
Blocks (Seattle)OR5B17
SuperfamilyQ8NGF7
Human Protein AtlasENSG00000197786
Peptide AtlasQ8NGF7
HPRD15036
IPIIPI00140505   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGF7
IntAct (EBI)Q8NGF7
FunCoupENSG00000197786
BioGRIDOR5B17
STRING (EMBL)OR5B17
ZODIACOR5B17
Ontologies - Pathways
QuickGOQ8NGF7
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5B17
Atlas of Cancer Signalling NetworkOR5B17
Wikipedia pathwaysOR5B17
Orthology - Evolution
OrthoDB219965
GeneTree (enSembl)ENSG00000197786
Phylogenetic Trees/Animal Genes : TreeFamOR5B17
HOVERGENQ8NGF7
HOGENOMQ8NGF7
Homologs : HomoloGeneOR5B17
Homology/Alignments : Family Browser (UCSC)OR5B17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5B17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5B17
dbVarOR5B17
ClinVarOR5B17
1000_GenomesOR5B17 
Exome Variant ServerOR5B17
ExAC (Exome Aggregation Consortium)OR5B17 (select the gene name)
Genetic variants : HAPMAP219965
Genomic Variants (DGV)OR5B17 [DGVbeta]
DECIPHEROR5B17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5B17 
Mutations
ICGC Data PortalOR5B17 
TCGA Data PortalOR5B17 
Broad Tumor PortalOR5B17
OASIS PortalOR5B17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5B17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5B17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5B17
DgiDB (Drug Gene Interaction Database)OR5B17
DoCM (Curated mutations)OR5B17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5B17 (select a term)
intoGenOR5B17
Cancer3DOR5B17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5B17
Genetic Testing Registry OR5B17
NextProtQ8NGF7 [Medical]
TSGene219965
GENETestsOR5B17
Target ValidationOR5B17
Huge Navigator OR5B17 [HugePedia]
snp3D : Map Gene to Disease219965
BioCentury BCIQOR5B17
ClinGenOR5B17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219965
Chemical/Pharm GKB GenePA32486
Clinical trialOR5B17
Miscellaneous
canSAR (ICR)OR5B17 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5B17
EVEXOR5B17
GoPubMedOR5B17
iHOPOR5B17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:23 CEST 2017

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