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OR5B2 (olfactory receptor family 5 subfamily B member 2)

Identity

Alias_namesolfactory receptor, family 5, subfamily B, member 2
Alias_symbol (synonym)OST073
Other aliasOR11-240
HGNC (Hugo) OR5B2
LocusID (NCBI) 390190
Atlas_Id 71417
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 58422265 and ends at 58423313 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5B2   8323
Cards
Entrez_Gene (NCBI)OR5B2  390190  olfactory receptor family 5 subfamily B member 2
AliasesOR11-240; OST073
GeneCards (Weizmann)OR5B2
Ensembl hg19 (Hinxton)ENSG00000172365 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172365 [Gene_View]  chr11:58422265-58423313 [Contig_View]  OR5B2 [Vega]
ICGC DataPortalENSG00000172365
TCGA cBioPortalOR5B2
AceView (NCBI)OR5B2
Genatlas (Paris)OR5B2
WikiGenes390190
SOURCE (Princeton)OR5B2
Genetics Home Reference (NIH)OR5B2
Genomic and cartography
GoldenPath hg38 (UCSC)OR5B2  -     chr11:58422265-58423313 -  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5B2  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR5B2 - 11q12.1 [CytoView hg19]  OR5B2 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR5B2 [Mapview hg19]  OR5B2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136922 BC136923
RefSeq transcript (Entrez)NM_001005566
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5B2
Cluster EST : UnigeneHs.553753 [ NCBI ]
CGAP (NCI)Hs.553753
Alternative Splicing GalleryENSG00000172365
Gene ExpressionOR5B2 [ NCBI-GEO ]   OR5B2 [ EBI - ARRAY_EXPRESS ]   OR5B2 [ SEEK ]   OR5B2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5B2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390190
GTEX Portal (Tissue expression)OR5B2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96R09   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96R09  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96R09
Splice isoforms : SwissVarQ96R09
PhosPhoSitePlusQ96R09
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5B2
DMDM Disease mutations390190
Blocks (Seattle)OR5B2
SuperfamilyQ96R09
Human Protein AtlasENSG00000172365
Peptide AtlasQ96R09
HPRD15037
IPIIPI00375736   
Protein Interaction databases
DIP (DOE-UCLA)Q96R09
IntAct (EBI)Q96R09
FunCoupENSG00000172365
BioGRIDOR5B2
STRING (EMBL)OR5B2
ZODIACOR5B2
Ontologies - Pathways
QuickGOQ96R09
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5B2
Atlas of Cancer Signalling NetworkOR5B2
Wikipedia pathwaysOR5B2
Orthology - Evolution
OrthoDB390190
GeneTree (enSembl)ENSG00000172365
Phylogenetic Trees/Animal Genes : TreeFamOR5B2
HOVERGENQ96R09
HOGENOMQ96R09
Homologs : HomoloGeneOR5B2
Homology/Alignments : Family Browser (UCSC)OR5B2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5B2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5B2
dbVarOR5B2
ClinVarOR5B2
1000_GenomesOR5B2 
Exome Variant ServerOR5B2
ExAC (Exome Aggregation Consortium)OR5B2 (select the gene name)
Genetic variants : HAPMAP390190
Genomic Variants (DGV)OR5B2 [DGVbeta]
DECIPHEROR5B2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5B2 
Mutations
ICGC Data PortalOR5B2 
TCGA Data PortalOR5B2 
Broad Tumor PortalOR5B2
OASIS PortalOR5B2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5B2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5B2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5B2
DgiDB (Drug Gene Interaction Database)OR5B2
DoCM (Curated mutations)OR5B2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5B2 (select a term)
intoGenOR5B2
Cancer3DOR5B2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5B2
Genetic Testing Registry OR5B2
NextProtQ96R09 [Medical]
TSGene390190
GENETestsOR5B2
Huge Navigator OR5B2 [HugePedia]
snp3D : Map Gene to Disease390190
BioCentury BCIQOR5B2
ClinGenOR5B2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390190
Chemical/Pharm GKB GenePA32490
Clinical trialOR5B2
Miscellaneous
canSAR (ICR)OR5B2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5B2
EVEXOR5B2
GoPubMedOR5B2
iHOPOR5B2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:46:56 CEST 2017

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