Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR5B21 (olfactory receptor family 5 subfamily B member 21)

Identity

Alias_namesolfactory receptor, family 5, subfamily B, member 21
Other alias-
HGNC (Hugo) OR5B21
LocusID (NCBI) 219968
Atlas_Id 71418
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 58507176 and ends at 58508105 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OR5B21   19616
Cards
Entrez_Gene (NCBI)OR5B21  219968  olfactory receptor family 5 subfamily B member 21
Aliases
GeneCards (Weizmann)OR5B21
Ensembl hg19 (Hinxton)ENSG00000198283 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198283 [Gene_View]  ENSG00000198283 [Sequence]  chr11:58507176-58508105 [Contig_View]  OR5B21 [Vega]
ICGC DataPortalENSG00000198283
TCGA cBioPortalOR5B21
AceView (NCBI)OR5B21
Genatlas (Paris)OR5B21
WikiGenes219968
SOURCE (Princeton)OR5B21
Genetics Home Reference (NIH)OR5B21
Genomic and cartography
GoldenPath hg38 (UCSC)OR5B21  -     chr11:58507176-58508105 -  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5B21  -     11q12.1   [Description]    (hg19-Feb_2009)
GoldenPathOR5B21 - 11q12.1 [CytoView hg19]  OR5B21 - 11q12.1 [CytoView hg38]
ImmunoBaseENSG00000198283
Mapping of homologs : NCBIOR5B21 [Mapview hg19]  OR5B21 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005218
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5B21
Alternative Splicing GalleryENSG00000198283
Gene ExpressionOR5B21 [ NCBI-GEO ]   OR5B21 [ EBI - ARRAY_EXPRESS ]   OR5B21 [ SEEK ]   OR5B21 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5B21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219968
GTEX Portal (Tissue expression)OR5B21
Human Protein AtlasENSG00000198283-OR5B21 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NL26   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NL26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NL26
Splice isoforms : SwissVarA6NL26
PhosPhoSitePlusA6NL26
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR5B21
DMDM Disease mutations219968
Blocks (Seattle)OR5B21
SuperfamilyA6NL26
Human Protein Atlas [tissue]ENSG00000198283-OR5B21 [tissue]
Peptide AtlasA6NL26
HPRD17753
IPIIPI00140509   
Protein Interaction databases
DIP (DOE-UCLA)A6NL26
IntAct (EBI)A6NL26
FunCoupENSG00000198283
BioGRIDOR5B21
STRING (EMBL)OR5B21
ZODIACOR5B21
Ontologies - Pathways
QuickGOA6NL26
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G protein-coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G protein-coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR5B21
Atlas of Cancer Signalling NetworkOR5B21
Wikipedia pathwaysOR5B21
Orthology - Evolution
OrthoDB219968
GeneTree (enSembl)ENSG00000198283
Phylogenetic Trees/Animal Genes : TreeFamOR5B21
HOGENOMA6NL26
Homologs : HomoloGeneOR5B21
Homology/Alignments : Family Browser (UCSC)OR5B21
Gene fusions - Rearrangements
Fusion : QuiverOR5B21
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5B21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5B21
dbVarOR5B21
ClinVarOR5B21
1000_GenomesOR5B21 
Exome Variant ServerOR5B21
ExAC (Exome Aggregation Consortium)ENSG00000198283
GNOMAD BrowserENSG00000198283
Varsome BrowserOR5B21
Genetic variants : HAPMAP219968
Genomic Variants (DGV)OR5B21 [DGVbeta]
DECIPHEROR5B21 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5B21 
Mutations
ICGC Data PortalOR5B21 
TCGA Data PortalOR5B21 
Broad Tumor PortalOR5B21
OASIS PortalOR5B21 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5B21  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOR5B21
Mutations and Diseases : HGMDOR5B21
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5B21
DgiDB (Drug Gene Interaction Database)OR5B21
DoCM (Curated mutations)OR5B21 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5B21 (select a term)
intoGenOR5B21
Cancer3DOR5B21(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR5B21
MedgenOR5B21
Genetic Testing Registry OR5B21
NextProtA6NL26 [Medical]
TSGene219968
GENETestsOR5B21
Target ValidationOR5B21
Huge Navigator OR5B21 [HugePedia]
snp3D : Map Gene to Disease219968
BioCentury BCIQOR5B21
ClinGenOR5B21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219968
Chemical/Pharm GKB GenePA134867164
Clinical trialOR5B21
Miscellaneous
canSAR (ICR)OR5B21 (select the gene name)
HarmonizomeOR5B21
DataMed IndexOR5B21
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5B21
EVEXOR5B21
GoPubMedOR5B21
iHOPOR5B21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun May 10 11:52:10 CEST 2020
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.