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OR5B3 (olfactory receptor family 5 subfamily B member 3)

Identity

Alias_namesOR5B13
olfactory receptor, family 5, subfamily B, member 3
Alias_symbol (synonym)OST129
Other aliasOR11-239
HGNC (Hugo) OR5B3
LocusID (NCBI) 441608
Atlas_Id 71419
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 58402465 and ends at 58403409 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5B3   8324
Cards
Entrez_Gene (NCBI)OR5B3  441608  olfactory receptor family 5 subfamily B member 3
AliasesOR11-239; OR5B13; OST129
GeneCards (Weizmann)OR5B3
Ensembl hg19 (Hinxton)ENSG00000172769 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172769 [Gene_View]  chr11:58402465-58403409 [Contig_View]  OR5B3 [Vega]
ICGC DataPortalENSG00000172769
TCGA cBioPortalOR5B3
AceView (NCBI)OR5B3
Genatlas (Paris)OR5B3
WikiGenes441608
SOURCE (Princeton)OR5B3
Genetics Home Reference (NIH)OR5B3
Genomic and cartography
GoldenPath hg38 (UCSC)OR5B3  -     chr11:58402465-58403409 -  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5B3  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR5B3 - 11q12.1 [CytoView hg19]  OR5B3 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR5B3 [Mapview hg19]  OR5B3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005469
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5B3
Cluster EST : UnigeneHs.553826 [ NCBI ]
CGAP (NCI)Hs.553826
Alternative Splicing GalleryENSG00000172769
Gene ExpressionOR5B3 [ NCBI-GEO ]   OR5B3 [ EBI - ARRAY_EXPRESS ]   OR5B3 [ SEEK ]   OR5B3 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5B3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441608
GTEX Portal (Tissue expression)OR5B3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH48   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH48  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH48
Splice isoforms : SwissVarQ8NH48
PhosPhoSitePlusQ8NH48
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5B3
DMDM Disease mutations441608
Blocks (Seattle)OR5B3
SuperfamilyQ8NH48
Human Protein AtlasENSG00000172769
Peptide AtlasQ8NH48
HPRD15038
IPIIPI00169148   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH48
IntAct (EBI)Q8NH48
FunCoupENSG00000172769
BioGRIDOR5B3
STRING (EMBL)OR5B3
ZODIACOR5B3
Ontologies - Pathways
QuickGOQ8NH48
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5B3
Atlas of Cancer Signalling NetworkOR5B3
Wikipedia pathwaysOR5B3
Orthology - Evolution
OrthoDB441608
GeneTree (enSembl)ENSG00000172769
Phylogenetic Trees/Animal Genes : TreeFamOR5B3
HOVERGENQ8NH48
HOGENOMQ8NH48
Homologs : HomoloGeneOR5B3
Homology/Alignments : Family Browser (UCSC)OR5B3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5B3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5B3
dbVarOR5B3
ClinVarOR5B3
1000_GenomesOR5B3 
Exome Variant ServerOR5B3
ExAC (Exome Aggregation Consortium)OR5B3 (select the gene name)
Genetic variants : HAPMAP441608
Genomic Variants (DGV)OR5B3 [DGVbeta]
DECIPHEROR5B3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5B3 
Mutations
ICGC Data PortalOR5B3 
TCGA Data PortalOR5B3 
Broad Tumor PortalOR5B3
OASIS PortalOR5B3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5B3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5B3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5B3
DgiDB (Drug Gene Interaction Database)OR5B3
DoCM (Curated mutations)OR5B3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5B3 (select a term)
intoGenOR5B3
Cancer3DOR5B3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5B3
Genetic Testing Registry OR5B3
NextProtQ8NH48 [Medical]
TSGene441608
GENETestsOR5B3
Target ValidationOR5B3
Huge Navigator OR5B3 [HugePedia]
snp3D : Map Gene to Disease441608
BioCentury BCIQOR5B3
ClinGenOR5B3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441608
Chemical/Pharm GKB GenePA32491
Clinical trialOR5B3
Miscellaneous
canSAR (ICR)OR5B3 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5B3
EVEXOR5B3
GoPubMedOR5B3
iHOPOR5B3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:23 CEST 2017

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