Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OR5C1 (olfactory receptor, family 5, subfamily C, member 1)

Identity

Alias_namesOR5C2P
olfactory receptor, family 5, subfamily C, member 1
Alias_symbol (synonym)OR9-F
hRPK-465_F_21
Other aliasOR9-31
HGNC (Hugo) OR5C1
LocusID (NCBI) 392391
Atlas_Id 71420
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 125551212 and ends at 125552174 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5C1   8331
Cards
Entrez_Gene (NCBI)OR5C1  392391  olfactory receptor, family 5, subfamily C, member 1
AliasesOR5C2P; OR9-31; OR9-F
GeneCards (Weizmann)OR5C1
Ensembl hg19 (Hinxton)ENSG00000148215 [Gene_View]  chr9:125551212-125552174 [Contig_View]  OR5C1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000148215 [Gene_View]  chr9:125551212-125552174 [Contig_View]  OR5C1 [Vega]
ICGC DataPortalENSG00000148215
TCGA cBioPortalOR5C1
AceView (NCBI)OR5C1
Genatlas (Paris)OR5C1
WikiGenes392391
SOURCE (Princeton)OR5C1
Genetics Home Reference (NIH)OR5C1
Genomic and cartography
GoldenPath hg19 (UCSC)OR5C1  -     chr9:125551212-125552174 +  9q33.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR5C1  -     9q33.2   [Description]    (hg38-Dec_2013)
EnsemblOR5C1 - 9q33.2 [CytoView hg19]  OR5C1 - 9q33.2 [CytoView hg38]
Mapping of homologs : NCBIOR5C1 [Mapview hg19]  OR5C1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136700 BC136701
RefSeq transcript (Entrez)NM_001001923
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)OR5C1
Cluster EST : UnigeneHs.534761 [ NCBI ]
CGAP (NCI)Hs.534761
Alternative Splicing GalleryENSG00000148215
Gene ExpressionOR5C1 [ NCBI-GEO ]   OR5C1 [ EBI - ARRAY_EXPRESS ]   OR5C1 [ SEEK ]   OR5C1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5C1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)392391
GTEX Portal (Tissue expression)OR5C1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGR4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGR4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGR4
Splice isoforms : SwissVarQ8NGR4
PhosPhoSitePlusQ8NGR4
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5C1
DMDM Disease mutations392391
Blocks (Seattle)OR5C1
SuperfamilyQ8NGR4
Human Protein AtlasENSG00000148215
Peptide AtlasQ8NGR4
HPRD15039
IPIIPI00185143   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGR4
IntAct (EBI)Q8NGR4
FunCoupENSG00000148215
BioGRIDOR5C1
STRING (EMBL)OR5C1
ZODIACOR5C1
Ontologies - Pathways
QuickGOQ8NGR4
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5C1
Atlas of Cancer Signalling NetworkOR5C1
Wikipedia pathwaysOR5C1
Orthology - Evolution
OrthoDB392391
GeneTree (enSembl)ENSG00000148215
Phylogenetic Trees/Animal Genes : TreeFamOR5C1
HOVERGENQ8NGR4
HOGENOMQ8NGR4
Homologs : HomoloGeneOR5C1
Homology/Alignments : Family Browser (UCSC)OR5C1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5C1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5C1
dbVarOR5C1
ClinVarOR5C1
1000_GenomesOR5C1 
Exome Variant ServerOR5C1
ExAC (Exome Aggregation Consortium)OR5C1 (select the gene name)
Genetic variants : HAPMAP392391
Genomic Variants (DGV)OR5C1 [DGVbeta]
DECIPHER (Syndromes)9:125551212-125552174  ENSG00000148215
CONAN: Copy Number AnalysisOR5C1 
Mutations
ICGC Data PortalOR5C1 
TCGA Data PortalOR5C1 
Broad Tumor PortalOR5C1
OASIS PortalOR5C1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5C1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5C1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5C1
DgiDB (Drug Gene Interaction Database)OR5C1
DoCM (Curated mutations)OR5C1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5C1 (select a term)
intoGenOR5C1
Cancer3DOR5C1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5C1
Genetic Testing Registry OR5C1
NextProtQ8NGR4 [Medical]
TSGene392391
GENETestsOR5C1
Huge Navigator OR5C1 [HugePedia]
snp3D : Map Gene to Disease392391
BioCentury BCIQOR5C1
ClinGenOR5C1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD392391
Chemical/Pharm GKB GenePA32511
Clinical trialOR5C1
Miscellaneous
canSAR (ICR)OR5C1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5C1
EVEXOR5C1
GoPubMedOR5C1
iHOPOR5C1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:57 CET 2017

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