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OR5D13 (olfactory receptor family 5 subfamily D member 13 (gene/pseudogene))

Identity

Alias_namesolfactory receptor, family 5, subfamily D, member 13 (gene/pseudogene)
Other alias-
HGNC (Hugo) OR5D13
LocusID (NCBI) 390142
Atlas_Id 71421
Location 11q11  [Link to chromosome band 11q11]
Location_base_pair Starts at 55773438 and ends at 55774382 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5D13   15280
Cards
Entrez_Gene (NCBI)OR5D13  390142  olfactory receptor family 5 subfamily D member 13 (gene/pseudogene)
Aliases
GeneCards (Weizmann)OR5D13
Ensembl hg19 (Hinxton)ENSG00000198877 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198877 [Gene_View]  chr11:55773438-55774382 [Contig_View]  OR5D13 [Vega]
ICGC DataPortalENSG00000198877
TCGA cBioPortalOR5D13
AceView (NCBI)OR5D13
Genatlas (Paris)OR5D13
WikiGenes390142
SOURCE (Princeton)OR5D13
Genetics Home Reference (NIH)OR5D13
Genomic and cartography
GoldenPath hg38 (UCSC)OR5D13  -     chr11:55773438-55774382 +  11q11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5D13  -     11q11   [Description]    (hg19-Feb_2009)
EnsemblOR5D13 - 11q11 [CytoView hg19]  OR5D13 - 11q11 [CytoView hg38]
Mapping of homologs : NCBIOR5D13 [Mapview hg19]  OR5D13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001001967
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5D13
Cluster EST : UnigeneHs.553743 [ NCBI ]
CGAP (NCI)Hs.553743
Alternative Splicing GalleryENSG00000198877
Gene ExpressionOR5D13 [ NCBI-GEO ]   OR5D13 [ EBI - ARRAY_EXPRESS ]   OR5D13 [ SEEK ]   OR5D13 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5D13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390142
GTEX Portal (Tissue expression)OR5D13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGL4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGL4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGL4
Splice isoforms : SwissVarQ8NGL4
PhosPhoSitePlusQ8NGL4
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5D13
DMDM Disease mutations390142
Blocks (Seattle)OR5D13
SuperfamilyQ8NGL4
Human Protein AtlasENSG00000198877
Peptide AtlasQ8NGL4
HPRD15040
IPIIPI00169052   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGL4
IntAct (EBI)Q8NGL4
FunCoupENSG00000198877
BioGRIDOR5D13
STRING (EMBL)OR5D13
ZODIACOR5D13
Ontologies - Pathways
QuickGOQ8NGL4
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5D13
Atlas of Cancer Signalling NetworkOR5D13
Wikipedia pathwaysOR5D13
Orthology - Evolution
OrthoDB390142
GeneTree (enSembl)ENSG00000198877
Phylogenetic Trees/Animal Genes : TreeFamOR5D13
HOVERGENQ8NGL4
HOGENOMQ8NGL4
Homologs : HomoloGeneOR5D13
Homology/Alignments : Family Browser (UCSC)OR5D13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5D13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5D13
dbVarOR5D13
ClinVarOR5D13
1000_GenomesOR5D13 
Exome Variant ServerOR5D13
ExAC (Exome Aggregation Consortium)OR5D13 (select the gene name)
Genetic variants : HAPMAP390142
Genomic Variants (DGV)OR5D13 [DGVbeta]
DECIPHEROR5D13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5D13 
Mutations
ICGC Data PortalOR5D13 
TCGA Data PortalOR5D13 
Broad Tumor PortalOR5D13
OASIS PortalOR5D13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5D13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5D13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5D13
DgiDB (Drug Gene Interaction Database)OR5D13
DoCM (Curated mutations)OR5D13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5D13 (select a term)
intoGenOR5D13
Cancer3DOR5D13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5D13
Genetic Testing Registry OR5D13
NextProtQ8NGL4 [Medical]
TSGene390142
GENETestsOR5D13
Target ValidationOR5D13
Huge Navigator OR5D13 [HugePedia]
snp3D : Map Gene to Disease390142
BioCentury BCIQOR5D13
ClinGenOR5D13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390142
Chemical/Pharm GKB GenePA32516
Clinical trialOR5D13
Miscellaneous
canSAR (ICR)OR5D13 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5D13
EVEXOR5D13
GoPubMedOR5D13
iHOPOR5D13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:34:42 CEST 2017

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