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OR5D16 (olfactory receptor family 5 subfamily D member 16)

Identity

Alias_namesolfactory receptor, family 5, subfamily D, member 16
Other aliasOR11-154
HGNC (Hugo) OR5D16
LocusID (NCBI) 390144
Atlas_Id 71423
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 55838752 and ends at 55839738 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5D16   15283
Cards
Entrez_Gene (NCBI)OR5D16  390144  olfactory receptor family 5 subfamily D member 16
AliasesOR11-154
GeneCards (Weizmann)OR5D16
Ensembl hg19 (Hinxton)ENSG00000205029 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205029 [Gene_View]  chr11:55838752-55839738 [Contig_View]  OR5D16 [Vega]
ICGC DataPortalENSG00000205029
TCGA cBioPortalOR5D16
AceView (NCBI)OR5D16
Genatlas (Paris)OR5D16
WikiGenes390144
SOURCE (Princeton)OR5D16
Genetics Home Reference (NIH)OR5D16
Genomic and cartography
GoldenPath hg38 (UCSC)OR5D16  -     chr11:55838752-55839738 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5D16  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR5D16 - 11q12.1 [CytoView hg19]  OR5D16 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR5D16 [Mapview hg19]  OR5D16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC148515 BC153112
RefSeq transcript (Entrez)NM_001005496
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5D16
Cluster EST : UnigeneHs.554527 [ NCBI ]
CGAP (NCI)Hs.554527
Alternative Splicing GalleryENSG00000205029
Gene ExpressionOR5D16 [ NCBI-GEO ]   OR5D16 [ EBI - ARRAY_EXPRESS ]   OR5D16 [ SEEK ]   OR5D16 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5D16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390144
GTEX Portal (Tissue expression)OR5D16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGK9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGK9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGK9
Splice isoforms : SwissVarQ8NGK9
PhosPhoSitePlusQ8NGK9
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5D16
DMDM Disease mutations390144
Blocks (Seattle)OR5D16
SuperfamilyQ8NGK9
Human Protein AtlasENSG00000205029
Peptide AtlasQ8NGK9
HPRD17757
IPIIPI00386339   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGK9
IntAct (EBI)Q8NGK9
FunCoupENSG00000205029
BioGRIDOR5D16
STRING (EMBL)OR5D16
ZODIACOR5D16
Ontologies - Pathways
QuickGOQ8NGK9
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5D16
Atlas of Cancer Signalling NetworkOR5D16
Wikipedia pathwaysOR5D16
Orthology - Evolution
OrthoDB390144
GeneTree (enSembl)ENSG00000205029
Phylogenetic Trees/Animal Genes : TreeFamOR5D16
HOVERGENQ8NGK9
HOGENOMQ8NGK9
Homologs : HomoloGeneOR5D16
Homology/Alignments : Family Browser (UCSC)OR5D16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5D16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5D16
dbVarOR5D16
ClinVarOR5D16
1000_GenomesOR5D16 
Exome Variant ServerOR5D16
ExAC (Exome Aggregation Consortium)OR5D16 (select the gene name)
Genetic variants : HAPMAP390144
Genomic Variants (DGV)OR5D16 [DGVbeta]
DECIPHEROR5D16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5D16 
Mutations
ICGC Data PortalOR5D16 
TCGA Data PortalOR5D16 
Broad Tumor PortalOR5D16
OASIS PortalOR5D16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5D16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5D16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5D16
DgiDB (Drug Gene Interaction Database)OR5D16
DoCM (Curated mutations)OR5D16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5D16 (select a term)
intoGenOR5D16
Cancer3DOR5D16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5D16
Genetic Testing Registry OR5D16
NextProtQ8NGK9 [Medical]
TSGene390144
GENETestsOR5D16
Target ValidationOR5D16
Huge Navigator OR5D16 [HugePedia]
snp3D : Map Gene to Disease390144
BioCentury BCIQOR5D16
ClinGenOR5D16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390144
Chemical/Pharm GKB GenePA32519
Clinical trialOR5D16
Miscellaneous
canSAR (ICR)OR5D16 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5D16
EVEXOR5D16
GoPubMedOR5D16
iHOPOR5D16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:34:43 CEST 2017

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