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OR5D18 (olfactory receptor, family 5, subfamily D, member 18)

Identity

Alias_namesolfactory receptor, family 5, subfamily D, member 18
Other aliasOR11-143
HGNC (Hugo) OR5D18
LocusID (NCBI) 219438
Atlas_Id 71424
Location 11q11  [Link to chromosome band 11q11]
Location_base_pair Starts at 55587106 and ends at 55588047 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5D18   15285
Cards
Entrez_Gene (NCBI)OR5D18  219438  olfactory receptor, family 5, subfamily D, member 18
AliasesOR11-143
GeneCards (Weizmann)OR5D18
Ensembl hg19 (Hinxton)ENSG00000186119 [Gene_View]  chr11:55587106-55588047 [Contig_View]  OR5D18 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186119 [Gene_View]  chr11:55587106-55588047 [Contig_View]  OR5D18 [Vega]
ICGC DataPortalENSG00000186119
TCGA cBioPortalOR5D18
AceView (NCBI)OR5D18
Genatlas (Paris)OR5D18
WikiGenes219438
SOURCE (Princeton)OR5D18
Genetics Home Reference (NIH)OR5D18
Genomic and cartography
GoldenPath hg19 (UCSC)OR5D18  -     chr11:55587106-55588047 +  11q11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR5D18  -     11q11   [Description]    (hg38-Dec_2013)
EnsemblOR5D18 - 11q11 [CytoView hg19]  OR5D18 - 11q11 [CytoView hg38]
Mapping of homologs : NCBIOR5D18 [Mapview hg19]  OR5D18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136925 BC136927
RefSeq transcript (Entrez)NM_001001952
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)OR5D18
Cluster EST : UnigeneHs.553624 [ NCBI ]
CGAP (NCI)Hs.553624
Alternative Splicing GalleryENSG00000186119
Gene ExpressionOR5D18 [ NCBI-GEO ]   OR5D18 [ EBI - ARRAY_EXPRESS ]   OR5D18 [ SEEK ]   OR5D18 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5D18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219438
GTEX Portal (Tissue expression)OR5D18
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGL1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGL1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGL1
Splice isoforms : SwissVarQ8NGL1
PhosPhoSitePlusQ8NGL1
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5D18
DMDM Disease mutations219438
Blocks (Seattle)OR5D18
SuperfamilyQ8NGL1
Human Protein AtlasENSG00000186119
Peptide AtlasQ8NGL1
HPRD17758
IPIIPI00169049   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGL1
IntAct (EBI)Q8NGL1
FunCoupENSG00000186119
BioGRIDOR5D18
STRING (EMBL)OR5D18
ZODIACOR5D18
Ontologies - Pathways
QuickGOQ8NGL1
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5D18
Atlas of Cancer Signalling NetworkOR5D18
Wikipedia pathwaysOR5D18
Orthology - Evolution
OrthoDB219438
GeneTree (enSembl)ENSG00000186119
Phylogenetic Trees/Animal Genes : TreeFamOR5D18
HOVERGENQ8NGL1
HOGENOMQ8NGL1
Homologs : HomoloGeneOR5D18
Homology/Alignments : Family Browser (UCSC)OR5D18
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5D18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5D18
dbVarOR5D18
ClinVarOR5D18
1000_GenomesOR5D18 
Exome Variant ServerOR5D18
ExAC (Exome Aggregation Consortium)OR5D18 (select the gene name)
Genetic variants : HAPMAP219438
Genomic Variants (DGV)OR5D18 [DGVbeta]
DECIPHER (Syndromes)11:55587106-55588047  ENSG00000186119
CONAN: Copy Number AnalysisOR5D18 
Mutations
ICGC Data PortalOR5D18 
TCGA Data PortalOR5D18 
Broad Tumor PortalOR5D18
OASIS PortalOR5D18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5D18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5D18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5D18
DgiDB (Drug Gene Interaction Database)OR5D18
DoCM (Curated mutations)OR5D18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5D18 (select a term)
intoGenOR5D18
Cancer3DOR5D18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5D18
Genetic Testing Registry OR5D18
NextProtQ8NGL1 [Medical]
TSGene219438
GENETestsOR5D18
Huge Navigator OR5D18 [HugePedia]
snp3D : Map Gene to Disease219438
BioCentury BCIQOR5D18
ClinGenOR5D18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219438
Chemical/Pharm GKB GenePA32521
Clinical trialOR5D18
Miscellaneous
canSAR (ICR)OR5D18 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5D18
EVEXOR5D18
GoPubMedOR5D18
iHOPOR5D18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:58 CET 2017

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