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OR5F1 (olfactory receptor family 5 subfamily F member 1)

Identity

Alias_namesolfactory receptor, family 5, subfamily F, member 1
Alias_symbol (synonym)OR11-10
Other alias
HGNC (Hugo) OR5F1
LocusID (NCBI) 338674
Atlas_Id 71426
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 55993681 and ends at 55994625 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5F1   8343
Cards
Entrez_Gene (NCBI)OR5F1  338674  olfactory receptor family 5 subfamily F member 1
AliasesOR11-10
GeneCards (Weizmann)OR5F1
Ensembl hg19 (Hinxton)ENSG00000149133 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149133 [Gene_View]  chr11:55993681-55994625 [Contig_View]  OR5F1 [Vega]
ICGC DataPortalENSG00000149133
TCGA cBioPortalOR5F1
AceView (NCBI)OR5F1
Genatlas (Paris)OR5F1
WikiGenes338674
SOURCE (Princeton)OR5F1
Genetics Home Reference (NIH)OR5F1
Genomic and cartography
GoldenPath hg38 (UCSC)OR5F1  -     chr11:55993681-55994625 -  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5F1  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR5F1 - 11q12.1 [CytoView hg19]  OR5F1 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR5F1 [Mapview hg19]  OR5F1 [Mapview hg38]
OMIM608492   
Gene and transcription
Genbank (Entrez)BC101239 BC101241 BC101242
RefSeq transcript (Entrez)NM_003697
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5F1
Cluster EST : UnigeneHs.553702 [ NCBI ]
CGAP (NCI)Hs.553702
Alternative Splicing GalleryENSG00000149133
Gene ExpressionOR5F1 [ NCBI-GEO ]   OR5F1 [ EBI - ARRAY_EXPRESS ]   OR5F1 [ SEEK ]   OR5F1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5F1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338674
GTEX Portal (Tissue expression)OR5F1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95221   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95221  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95221
Splice isoforms : SwissVarO95221
PhosPhoSitePlusO95221
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5F1
DMDM Disease mutations338674
Blocks (Seattle)OR5F1
SuperfamilyO95221
Human Protein AtlasENSG00000149133
Peptide AtlasO95221
HPRD12246
IPIIPI00029411   
Protein Interaction databases
DIP (DOE-UCLA)O95221
IntAct (EBI)O95221
FunCoupENSG00000149133
BioGRIDOR5F1
STRING (EMBL)OR5F1
ZODIACOR5F1
Ontologies - Pathways
QuickGOO95221
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5F1
Atlas of Cancer Signalling NetworkOR5F1
Wikipedia pathwaysOR5F1
Orthology - Evolution
OrthoDB338674
GeneTree (enSembl)ENSG00000149133
Phylogenetic Trees/Animal Genes : TreeFamOR5F1
HOVERGENO95221
HOGENOMO95221
Homologs : HomoloGeneOR5F1
Homology/Alignments : Family Browser (UCSC)OR5F1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5F1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5F1
dbVarOR5F1
ClinVarOR5F1
1000_GenomesOR5F1 
Exome Variant ServerOR5F1
ExAC (Exome Aggregation Consortium)OR5F1 (select the gene name)
Genetic variants : HAPMAP338674
Genomic Variants (DGV)OR5F1 [DGVbeta]
DECIPHEROR5F1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5F1 
Mutations
ICGC Data PortalOR5F1 
TCGA Data PortalOR5F1 
Broad Tumor PortalOR5F1
OASIS PortalOR5F1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5F1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5F1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5F1
DgiDB (Drug Gene Interaction Database)OR5F1
DoCM (Curated mutations)OR5F1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5F1 (select a term)
intoGenOR5F1
Cancer3DOR5F1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608492   
Orphanet
MedgenOR5F1
Genetic Testing Registry OR5F1
NextProtO95221 [Medical]
TSGene338674
GENETestsOR5F1
Huge Navigator OR5F1 [HugePedia]
snp3D : Map Gene to Disease338674
BioCentury BCIQOR5F1
ClinGenOR5F1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338674
Chemical/Pharm GKB GenePA32526
Clinical trialOR5F1
Miscellaneous
canSAR (ICR)OR5F1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5F1
EVEXOR5F1
GoPubMedOR5F1
iHOPOR5F1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:46:58 CEST 2017

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