Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR5H1 (olfactory receptor family 5 subfamily H member 1)

Identity

Alias_namesolfactory receptor, family 5, subfamily H, member 1
Alias_symbol (synonym)HTPCRX14
HSHTPCRX14
Other alias
HGNC (Hugo) OR5H1
LocusID (NCBI) 26341
Atlas_Id 71427
Location 3q11.2  [Link to chromosome band 3q11]
Location_base_pair Starts at 98132698 and ends at 98133639 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5H1   8346
Cards
Entrez_Gene (NCBI)OR5H1  26341  olfactory receptor family 5 subfamily H member 1
AliasesHSHTPCRX14; HTPCRX14
GeneCards (Weizmann)OR5H1
Ensembl hg19 (Hinxton)ENSG00000231192 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231192 [Gene_View]  chr3:98132698-98133639 [Contig_View]  OR5H1 [Vega]
ICGC DataPortalENSG00000231192
TCGA cBioPortalOR5H1
AceView (NCBI)OR5H1
Genatlas (Paris)OR5H1
WikiGenes26341
SOURCE (Princeton)OR5H1
Genetics Home Reference (NIH)OR5H1
Genomic and cartography
GoldenPath hg38 (UCSC)OR5H1  -     chr3:98132698-98133639 +  3q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5H1  -     3q11.2   [Description]    (hg19-Feb_2009)
EnsemblOR5H1 - 3q11.2 [CytoView hg19]  OR5H1 - 3q11.2 [CytoView hg38]
Mapping of homologs : NCBIOR5H1 [Mapview hg19]  OR5H1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC148611 X64988
RefSeq transcript (Entrez)NM_001005338
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5H1
Cluster EST : UnigeneHs.537383 [ NCBI ]
CGAP (NCI)Hs.537383
Alternative Splicing GalleryENSG00000231192
Gene ExpressionOR5H1 [ NCBI-GEO ]   OR5H1 [ EBI - ARRAY_EXPRESS ]   OR5H1 [ SEEK ]   OR5H1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5H1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26341
GTEX Portal (Tissue expression)OR5H1
Human Protein AtlasENSG00000231192-OR5H1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NKK0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NKK0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NKK0
Splice isoforms : SwissVarA6NKK0
PhosPhoSitePlusA6NKK0
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5H1
DMDM Disease mutations26341
Blocks (Seattle)OR5H1
SuperfamilyA6NKK0
Human Protein Atlas [tissue]ENSG00000231192-OR5H1 [tissue]
Peptide AtlasA6NKK0
HPRD17759
IPIIPI00470569   
Protein Interaction databases
DIP (DOE-UCLA)A6NKK0
IntAct (EBI)A6NKK0
FunCoupENSG00000231192
BioGRIDOR5H1
STRING (EMBL)OR5H1
ZODIACOR5H1
Ontologies - Pathways
QuickGOA6NKK0
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5H1
Atlas of Cancer Signalling NetworkOR5H1
Wikipedia pathwaysOR5H1
Orthology - Evolution
OrthoDB26341
GeneTree (enSembl)ENSG00000231192
Phylogenetic Trees/Animal Genes : TreeFamOR5H1
HOVERGENA6NKK0
HOGENOMA6NKK0
Homologs : HomoloGeneOR5H1
Homology/Alignments : Family Browser (UCSC)OR5H1
Gene fusions - Rearrangements
Fusion: Tumor Portal OR5H1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5H1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5H1
dbVarOR5H1
ClinVarOR5H1
1000_GenomesOR5H1 
Exome Variant ServerOR5H1
ExAC (Exome Aggregation Consortium)ENSG00000231192
GNOMAD BrowserENSG00000231192
Genetic variants : HAPMAP26341
Genomic Variants (DGV)OR5H1 [DGVbeta]
DECIPHEROR5H1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5H1 
Mutations
ICGC Data PortalOR5H1 
TCGA Data PortalOR5H1 
Broad Tumor PortalOR5H1
OASIS PortalOR5H1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5H1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5H1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5H1
DgiDB (Drug Gene Interaction Database)OR5H1
DoCM (Curated mutations)OR5H1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5H1 (select a term)
intoGenOR5H1
Cancer3DOR5H1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5H1
Genetic Testing Registry OR5H1
NextProtA6NKK0 [Medical]
TSGene26341
GENETestsOR5H1
Target ValidationOR5H1
Huge Navigator OR5H1 [HugePedia]
snp3D : Map Gene to Disease26341
BioCentury BCIQOR5H1
ClinGenOR5H1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26341
Chemical/Pharm GKB GenePA32532
Clinical trialOR5H1
Miscellaneous
canSAR (ICR)OR5H1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5H1
EVEXOR5H1
GoPubMedOR5H1
iHOPOR5H1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:20:58 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.