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OR5H2 (olfactory receptor family 5 subfamily H member 2)

Identity

Alias_namesolfactory receptor, family 5, subfamily H, member 2
Other aliasOR3-10
HGNC (Hugo) OR5H2
LocusID (NCBI) 79310
Atlas_Id 71430
Location 3q11.2  [Link to chromosome band 3q11]
Location_base_pair Starts at 98282888 and ends at 98283832 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5H2   14752
Cards
Entrez_Gene (NCBI)OR5H2  79310  olfactory receptor family 5 subfamily H member 2
AliasesOR3-10
GeneCards (Weizmann)OR5H2
Ensembl hg19 (Hinxton)ENSG00000197938 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197938 [Gene_View]  chr3:98282888-98283832 [Contig_View]  OR5H2 [Vega]
ICGC DataPortalENSG00000197938
TCGA cBioPortalOR5H2
AceView (NCBI)OR5H2
Genatlas (Paris)OR5H2
WikiGenes79310
SOURCE (Princeton)OR5H2
Genetics Home Reference (NIH)OR5H2
Genomic and cartography
GoldenPath hg38 (UCSC)OR5H2  -     chr3:98282888-98283832 +  3q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5H2  -     3q11.2   [Description]    (hg19-Feb_2009)
EnsemblOR5H2 - 3q11.2 [CytoView hg19]  OR5H2 - 3q11.2 [CytoView hg38]
Mapping of homologs : NCBIOR5H2 [Mapview hg19]  OR5H2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005482
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5H2
Cluster EST : UnigeneHs.554711 [ NCBI ]
CGAP (NCI)Hs.554711
Alternative Splicing GalleryENSG00000197938
Gene ExpressionOR5H2 [ NCBI-GEO ]   OR5H2 [ EBI - ARRAY_EXPRESS ]   OR5H2 [ SEEK ]   OR5H2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5H2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79310
GTEX Portal (Tissue expression)OR5H2
Human Protein AtlasENSG00000197938-OR5H2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGV7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGV7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGV7
Splice isoforms : SwissVarQ8NGV7
PhosPhoSitePlusQ8NGV7
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5H2
DMDM Disease mutations79310
Blocks (Seattle)OR5H2
SuperfamilyQ8NGV7
Human Protein Atlas [tissue]ENSG00000197938-OR5H2 [tissue]
Peptide AtlasQ8NGV7
HPRD15042
IPIIPI00169163   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGV7
IntAct (EBI)Q8NGV7
FunCoupENSG00000197938
BioGRIDOR5H2
STRING (EMBL)OR5H2
ZODIACOR5H2
Ontologies - Pathways
QuickGOQ8NGV7
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5H2
Atlas of Cancer Signalling NetworkOR5H2
Wikipedia pathwaysOR5H2
Orthology - Evolution
OrthoDB79310
GeneTree (enSembl)ENSG00000197938
Phylogenetic Trees/Animal Genes : TreeFamOR5H2
HOVERGENQ8NGV7
HOGENOMQ8NGV7
Homologs : HomoloGeneOR5H2
Homology/Alignments : Family Browser (UCSC)OR5H2
Gene fusions - Rearrangements
Fusion: Tumor Portal OR5H2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5H2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5H2
dbVarOR5H2
ClinVarOR5H2
1000_GenomesOR5H2 
Exome Variant ServerOR5H2
ExAC (Exome Aggregation Consortium)ENSG00000197938
GNOMAD BrowserENSG00000197938
Genetic variants : HAPMAP79310
Genomic Variants (DGV)OR5H2 [DGVbeta]
DECIPHEROR5H2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5H2 
Mutations
ICGC Data PortalOR5H2 
TCGA Data PortalOR5H2 
Broad Tumor PortalOR5H2
OASIS PortalOR5H2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5H2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5H2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5H2
DgiDB (Drug Gene Interaction Database)OR5H2
DoCM (Curated mutations)OR5H2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5H2 (select a term)
intoGenOR5H2
Cancer3DOR5H2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5H2
Genetic Testing Registry OR5H2
NextProtQ8NGV7 [Medical]
TSGene79310
GENETestsOR5H2
Target ValidationOR5H2
Huge Navigator OR5H2 [HugePedia]
snp3D : Map Gene to Disease79310
BioCentury BCIQOR5H2
ClinGenOR5H2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79310
Chemical/Pharm GKB GenePA32533
Clinical trialOR5H2
Miscellaneous
canSAR (ICR)OR5H2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5H2
EVEXOR5H2
GoPubMedOR5H2
iHOPOR5H2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:20:58 CET 2017

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