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OR5H6 (olfactory receptor family 5 subfamily H member 6 (gene/pseudogene))

Identity

Alias_namesolfactory receptor, family 5, subfamily H, member 6
olfactory receptor, family 5, subfamily H, member 6 (gene/pseudogene)
Other aliasOR3-11
HGNC (Hugo) OR5H6
LocusID (NCBI) 79295
Atlas_Id 71431
Location 3q11.2  [Link to chromosome band 3q11]
Location_base_pair Starts at 98264285 and ends at 98265262 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5H6   14767
Cards
Entrez_Gene (NCBI)OR5H6  79295  olfactory receptor family 5 subfamily H member 6 (gene/pseudogene)
AliasesOR3-11
GeneCards (Weizmann)OR5H6
Ensembl hg19 (Hinxton)ENSG00000230301 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230301 [Gene_View]  chr3:98264285-98265262 [Contig_View]  OR5H6 [Vega]
ICGC DataPortalENSG00000230301
TCGA cBioPortalOR5H6
AceView (NCBI)OR5H6
Genatlas (Paris)OR5H6
WikiGenes79295
SOURCE (Princeton)OR5H6
Genetics Home Reference (NIH)OR5H6
Genomic and cartography
GoldenPath hg38 (UCSC)OR5H6  -     chr3:98264285-98265262 +  3q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5H6  -     3q11.2   [Description]    (hg19-Feb_2009)
EnsemblOR5H6 - 3q11.2 [CytoView hg19]  OR5H6 - 3q11.2 [CytoView hg38]
Mapping of homologs : NCBIOR5H6 [Mapview hg19]  OR5H6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137523 BC137524
RefSeq transcript (Entrez)NM_001005479
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5H6
Cluster EST : UnigeneHs.554712 [ NCBI ]
CGAP (NCI)Hs.554712
Alternative Splicing GalleryENSG00000230301
Gene ExpressionOR5H6 [ NCBI-GEO ]   OR5H6 [ EBI - ARRAY_EXPRESS ]   OR5H6 [ SEEK ]   OR5H6 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5H6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79295
GTEX Portal (Tissue expression)OR5H6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGV6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGV6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGV6
Splice isoforms : SwissVarQ8NGV6
PhosPhoSitePlusQ8NGV6
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5H6
DMDM Disease mutations79295
Blocks (Seattle)OR5H6
SuperfamilyQ8NGV6
Human Protein AtlasENSG00000230301
Peptide AtlasQ8NGV6
HPRD17761
IPIIPI00250136   IPI00169246   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGV6
IntAct (EBI)Q8NGV6
FunCoupENSG00000230301
BioGRIDOR5H6
STRING (EMBL)OR5H6
ZODIACOR5H6
Ontologies - Pathways
QuickGOQ8NGV6
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5H6
Atlas of Cancer Signalling NetworkOR5H6
Wikipedia pathwaysOR5H6
Orthology - Evolution
OrthoDB79295
GeneTree (enSembl)ENSG00000230301
Phylogenetic Trees/Animal Genes : TreeFamOR5H6
HOVERGENQ8NGV6
HOGENOMQ8NGV6
Homologs : HomoloGeneOR5H6
Homology/Alignments : Family Browser (UCSC)OR5H6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5H6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5H6
dbVarOR5H6
ClinVarOR5H6
1000_GenomesOR5H6 
Exome Variant ServerOR5H6
ExAC (Exome Aggregation Consortium)OR5H6 (select the gene name)
Genetic variants : HAPMAP79295
Genomic Variants (DGV)OR5H6 [DGVbeta]
DECIPHEROR5H6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5H6 
Mutations
ICGC Data PortalOR5H6 
TCGA Data PortalOR5H6 
Broad Tumor PortalOR5H6
OASIS PortalOR5H6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5H6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5H6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5H6
DgiDB (Drug Gene Interaction Database)OR5H6
DoCM (Curated mutations)OR5H6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5H6 (select a term)
intoGenOR5H6
Cancer3DOR5H6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5H6
Genetic Testing Registry OR5H6
NextProtQ8NGV6 [Medical]
TSGene79295
GENETestsOR5H6
Target ValidationOR5H6
Huge Navigator OR5H6 [HugePedia]
snp3D : Map Gene to Disease79295
BioCentury BCIQOR5H6
ClinGenOR5H6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79295
Chemical/Pharm GKB GenePA32537
Clinical trialOR5H6
Miscellaneous
canSAR (ICR)OR5H6 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5H6
EVEXOR5H6
GoPubMedOR5H6
iHOPOR5H6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:25 CEST 2017

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