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OR5J2 (olfactory receptor family 5 subfamily J member 2)

Identity

Alias_namesolfactory receptor, family 5, subfamily J, member 2
Other aliasOR11-266
HGNC (Hugo) OR5J2
LocusID (NCBI) 282775
Atlas_Id 71433
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 56176618 and ends at 56177556 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5J2   19612
Cards
Entrez_Gene (NCBI)OR5J2  282775  olfactory receptor family 5 subfamily J member 2
AliasesOR11-266
GeneCards (Weizmann)OR5J2
Ensembl hg19 (Hinxton)ENSG00000174957 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174957 [Gene_View]  chr11:56176618-56177556 [Contig_View]  OR5J2 [Vega]
ICGC DataPortalENSG00000174957
TCGA cBioPortalOR5J2
AceView (NCBI)OR5J2
Genatlas (Paris)OR5J2
WikiGenes282775
SOURCE (Princeton)OR5J2
Genetics Home Reference (NIH)OR5J2
Genomic and cartography
GoldenPath hg38 (UCSC)OR5J2  -     chr11:56176618-56177556 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5J2  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR5J2 - 11q12.1 [CytoView hg19]  OR5J2 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR5J2 [Mapview hg19]  OR5J2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC156209 BC156952 X64974
RefSeq transcript (Entrez)NM_001005492
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5J2
Cluster EST : UnigeneHs.537145 [ NCBI ]
CGAP (NCI)Hs.537145
Alternative Splicing GalleryENSG00000174957
Gene ExpressionOR5J2 [ NCBI-GEO ]   OR5J2 [ EBI - ARRAY_EXPRESS ]   OR5J2 [ SEEK ]   OR5J2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5J2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)282775
GTEX Portal (Tissue expression)OR5J2
Human Protein AtlasENSG00000174957-OR5J2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH18   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH18  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH18
Splice isoforms : SwissVarQ8NH18
PhosPhoSitePlusQ8NH18
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5J2
DMDM Disease mutations282775
Blocks (Seattle)OR5J2
SuperfamilyQ8NH18
Human Protein Atlas [tissue]ENSG00000174957-OR5J2 [tissue]
Peptide AtlasQ8NH18
HPRD17762
IPIIPI00169102   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH18
IntAct (EBI)Q8NH18
FunCoupENSG00000174957
BioGRIDOR5J2
STRING (EMBL)OR5J2
ZODIACOR5J2
Ontologies - Pathways
QuickGOQ8NH18
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5J2
Atlas of Cancer Signalling NetworkOR5J2
Wikipedia pathwaysOR5J2
Orthology - Evolution
OrthoDB282775
GeneTree (enSembl)ENSG00000174957
Phylogenetic Trees/Animal Genes : TreeFamOR5J2
HOVERGENQ8NH18
HOGENOMQ8NH18
Homologs : HomoloGeneOR5J2
Homology/Alignments : Family Browser (UCSC)OR5J2
Gene fusions - Rearrangements
Fusion: Tumor Portal OR5J2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5J2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5J2
dbVarOR5J2
ClinVarOR5J2
1000_GenomesOR5J2 
Exome Variant ServerOR5J2
ExAC (Exome Aggregation Consortium)ENSG00000174957
GNOMAD BrowserENSG00000174957
Genetic variants : HAPMAP282775
Genomic Variants (DGV)OR5J2 [DGVbeta]
DECIPHEROR5J2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5J2 
Mutations
ICGC Data PortalOR5J2 
TCGA Data PortalOR5J2 
Broad Tumor PortalOR5J2
OASIS PortalOR5J2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5J2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5J2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5J2
DgiDB (Drug Gene Interaction Database)OR5J2
DoCM (Curated mutations)OR5J2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5J2 (select a term)
intoGenOR5J2
Cancer3DOR5J2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5J2
Genetic Testing Registry OR5J2
NextProtQ8NH18 [Medical]
TSGene282775
GENETestsOR5J2
Target ValidationOR5J2
Huge Navigator OR5J2 [HugePedia]
snp3D : Map Gene to Disease282775
BioCentury BCIQOR5J2
ClinGenOR5J2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD282775
Chemical/Pharm GKB GenePA134982020
Clinical trialOR5J2
Miscellaneous
canSAR (ICR)OR5J2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5J2
EVEXOR5J2
GoPubMedOR5J2
iHOPOR5J2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:20:59 CET 2017

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