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OR5K1 (olfactory receptor family 5 subfamily K member 1)

Identity

Alias_namesolfactory receptor, family 5, subfamily K, member 1
Alias_symbol (synonym)HTPCRX10
HSHTPCRX10
Other aliasOR3-8
HGNC (Hugo) OR5K1
LocusID (NCBI) 26339
Atlas_Id 71434
Location 3q11.2  [Link to chromosome band 3q11]
Location_base_pair Starts at 98469480 and ends at 98470576 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5K1   8349
Cards
Entrez_Gene (NCBI)OR5K1  26339  olfactory receptor family 5 subfamily K member 1
AliasesHSHTPCRX10; HTPCRX10; OR3-8
GeneCards (Weizmann)OR5K1
Ensembl hg19 (Hinxton)ENSG00000232382 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232382 [Gene_View]  chr3:98469480-98470576 [Contig_View]  OR5K1 [Vega]
ICGC DataPortalENSG00000232382
TCGA cBioPortalOR5K1
AceView (NCBI)OR5K1
Genatlas (Paris)OR5K1
WikiGenes26339
SOURCE (Princeton)OR5K1
Genetics Home Reference (NIH)OR5K1
Genomic and cartography
GoldenPath hg38 (UCSC)OR5K1  -     chr3:98469480-98470576 +  3q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5K1  -     3q11.2   [Description]    (hg19-Feb_2009)
EnsemblOR5K1 - 3q11.2 [CytoView hg19]  OR5K1 - 3q11.2 [CytoView hg38]
Mapping of homologs : NCBIOR5K1 [Mapview hg19]  OR5K1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136918 BC136919 BC146325 BC148752 X64984
RefSeq transcript (Entrez)NM_001004736
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5K1
Cluster EST : UnigeneHs.621533 [ NCBI ]
CGAP (NCI)Hs.621533
Alternative Splicing GalleryENSG00000232382
Gene ExpressionOR5K1 [ NCBI-GEO ]   OR5K1 [ EBI - ARRAY_EXPRESS ]   OR5K1 [ SEEK ]   OR5K1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5K1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26339
GTEX Portal (Tissue expression)OR5K1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHB7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHB7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHB7
Splice isoforms : SwissVarQ8NHB7
PhosPhoSitePlusQ8NHB7
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5K1
DMDM Disease mutations26339
Blocks (Seattle)OR5K1
SuperfamilyQ8NHB7
Human Protein AtlasENSG00000232382
Peptide AtlasQ8NHB7
HPRD15043
IPIIPI00400819   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHB7
IntAct (EBI)Q8NHB7
FunCoupENSG00000232382
BioGRIDOR5K1
STRING (EMBL)OR5K1
ZODIACOR5K1
Ontologies - Pathways
QuickGOQ8NHB7
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5K1
Atlas of Cancer Signalling NetworkOR5K1
Wikipedia pathwaysOR5K1
Orthology - Evolution
OrthoDB26339
GeneTree (enSembl)ENSG00000232382
Phylogenetic Trees/Animal Genes : TreeFamOR5K1
HOVERGENQ8NHB7
HOGENOMQ8NHB7
Homologs : HomoloGeneOR5K1
Homology/Alignments : Family Browser (UCSC)OR5K1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5K1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5K1
dbVarOR5K1
ClinVarOR5K1
1000_GenomesOR5K1 
Exome Variant ServerOR5K1
ExAC (Exome Aggregation Consortium)OR5K1 (select the gene name)
Genetic variants : HAPMAP26339
Genomic Variants (DGV)OR5K1 [DGVbeta]
DECIPHEROR5K1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5K1 
Mutations
ICGC Data PortalOR5K1 
TCGA Data PortalOR5K1 
Broad Tumor PortalOR5K1
OASIS PortalOR5K1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5K1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5K1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5K1
DgiDB (Drug Gene Interaction Database)OR5K1
DoCM (Curated mutations)OR5K1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5K1 (select a term)
intoGenOR5K1
Cancer3DOR5K1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5K1
Genetic Testing Registry OR5K1
NextProtQ8NHB7 [Medical]
TSGene26339
GENETestsOR5K1
Target ValidationOR5K1
Huge Navigator OR5K1 [HugePedia]
snp3D : Map Gene to Disease26339
BioCentury BCIQOR5K1
ClinGenOR5K1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26339
Chemical/Pharm GKB GenePA32542
Clinical trialOR5K1
Miscellaneous
canSAR (ICR)OR5K1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5K1
EVEXOR5K1
GoPubMedOR5K1
iHOPOR5K1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:34:45 CEST 2017

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