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OR5K2 (olfactory receptor family 5 subfamily K member 2)

Identity

Alias_namesolfactory receptor, family 5, subfamily K, member 2
Other aliasOR3-9
HGNC (Hugo) OR5K2
LocusID (NCBI) 402135
Atlas_Id 71435
Location 3q11.2  [Link to chromosome band 3q11]
Location_base_pair Starts at 98497681 and ends at 98498631 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5K2   14774
Cards
Entrez_Gene (NCBI)OR5K2  402135  olfactory receptor family 5 subfamily K member 2
AliasesOR3-9
GeneCards (Weizmann)OR5K2
Ensembl hg19 (Hinxton)ENSG00000231861 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231861 [Gene_View]  chr3:98497681-98498631 [Contig_View]  OR5K2 [Vega]
ICGC DataPortalENSG00000231861
TCGA cBioPortalOR5K2
AceView (NCBI)OR5K2
Genatlas (Paris)OR5K2
WikiGenes402135
SOURCE (Princeton)OR5K2
Genetics Home Reference (NIH)OR5K2
Genomic and cartography
GoldenPath hg38 (UCSC)OR5K2  -     chr3:98497681-98498631 +  3q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5K2  -     3q11.2   [Description]    (hg19-Feb_2009)
EnsemblOR5K2 - 3q11.2 [CytoView hg19]  OR5K2 - 3q11.2 [CytoView hg38]
Mapping of homologs : NCBIOR5K2 [Mapview hg19]  OR5K2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136724 BC136725
RefSeq transcript (Entrez)NM_001004737
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5K2
Cluster EST : UnigeneHs.632558 [ NCBI ]
CGAP (NCI)Hs.632558
Alternative Splicing GalleryENSG00000231861
Gene ExpressionOR5K2 [ NCBI-GEO ]   OR5K2 [ EBI - ARRAY_EXPRESS ]   OR5K2 [ SEEK ]   OR5K2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5K2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)402135
GTEX Portal (Tissue expression)OR5K2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHB8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHB8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHB8
Splice isoforms : SwissVarQ8NHB8
PhosPhoSitePlusQ8NHB8
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5K2
DMDM Disease mutations402135
Blocks (Seattle)OR5K2
SuperfamilyQ8NHB8
Human Protein AtlasENSG00000231861
Peptide AtlasQ8NHB8
HPRD15044
IPIIPI00169248   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHB8
IntAct (EBI)Q8NHB8
FunCoupENSG00000231861
BioGRIDOR5K2
STRING (EMBL)OR5K2
ZODIACOR5K2
Ontologies - Pathways
QuickGOQ8NHB8
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5K2
Atlas of Cancer Signalling NetworkOR5K2
Wikipedia pathwaysOR5K2
Orthology - Evolution
OrthoDB402135
GeneTree (enSembl)ENSG00000231861
Phylogenetic Trees/Animal Genes : TreeFamOR5K2
HOVERGENQ8NHB8
HOGENOMQ8NHB8
Homologs : HomoloGeneOR5K2
Homology/Alignments : Family Browser (UCSC)OR5K2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5K2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5K2
dbVarOR5K2
ClinVarOR5K2
1000_GenomesOR5K2 
Exome Variant ServerOR5K2
ExAC (Exome Aggregation Consortium)OR5K2 (select the gene name)
Genetic variants : HAPMAP402135
Genomic Variants (DGV)OR5K2 [DGVbeta]
DECIPHEROR5K2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5K2 
Mutations
ICGC Data PortalOR5K2 
TCGA Data PortalOR5K2 
Broad Tumor PortalOR5K2
OASIS PortalOR5K2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5K2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5K2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5K2
DgiDB (Drug Gene Interaction Database)OR5K2
DoCM (Curated mutations)OR5K2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5K2 (select a term)
intoGenOR5K2
Cancer3DOR5K2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5K2
Genetic Testing Registry OR5K2
NextProtQ8NHB8 [Medical]
TSGene402135
GENETestsOR5K2
Target ValidationOR5K2
Huge Navigator OR5K2 [HugePedia]
snp3D : Map Gene to Disease402135
BioCentury BCIQOR5K2
ClinGenOR5K2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD402135
Chemical/Pharm GKB GenePA32543
Clinical trialOR5K2
Miscellaneous
canSAR (ICR)OR5K2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5K2
EVEXOR5K2
GoPubMedOR5K2
iHOPOR5K2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:26 CEST 2017

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