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OR5K3 (olfactory receptor family 5 subfamily K member 3)

Identity

Alias_namesolfactory receptor, family 5, subfamily K, member 3
Other alias-
HGNC (Hugo) OR5K3
LocusID (NCBI) 403277
Atlas_Id 71436
Location 3q11.2  [Link to chromosome band 3q11]
Location_base_pair Starts at 98390666 and ends at 98391631 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5K3   31290
Cards
Entrez_Gene (NCBI)OR5K3  403277  olfactory receptor family 5 subfamily K member 3
Aliases
GeneCards (Weizmann)OR5K3
Ensembl hg19 (Hinxton)ENSG00000206536 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206536 [Gene_View]  chr3:98390666-98391631 [Contig_View]  OR5K3 [Vega]
ICGC DataPortalENSG00000206536
TCGA cBioPortalOR5K3
AceView (NCBI)OR5K3
Genatlas (Paris)OR5K3
WikiGenes403277
SOURCE (Princeton)OR5K3
Genetics Home Reference (NIH)OR5K3
Genomic and cartography
GoldenPath hg38 (UCSC)OR5K3  -     chr3:98390666-98391631 +  3q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5K3  -     3q11.2   [Description]    (hg19-Feb_2009)
EnsemblOR5K3 - 3q11.2 [CytoView hg19]  OR5K3 - 3q11.2 [CytoView hg38]
Mapping of homologs : NCBIOR5K3 [Mapview hg19]  OR5K3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005516
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5K3
Cluster EST : UnigeneHs.554709 [ NCBI ]
CGAP (NCI)Hs.554709
Alternative Splicing GalleryENSG00000206536
Gene ExpressionOR5K3 [ NCBI-GEO ]   OR5K3 [ EBI - ARRAY_EXPRESS ]   OR5K3 [ SEEK ]   OR5K3 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5K3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)403277
GTEX Portal (Tissue expression)OR5K3
Human Protein AtlasENSG00000206536-OR5K3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NET4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NET4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NET4
Splice isoforms : SwissVarA6NET4
PhosPhoSitePlusA6NET4
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5K3
DMDM Disease mutations403277
Blocks (Seattle)OR5K3
SuperfamilyA6NET4
Human Protein Atlas [tissue]ENSG00000206536-OR5K3 [tissue]
Peptide AtlasA6NET4
HPRD17763
IPIIPI00470612   
Protein Interaction databases
DIP (DOE-UCLA)A6NET4
IntAct (EBI)A6NET4
FunCoupENSG00000206536
BioGRIDOR5K3
STRING (EMBL)OR5K3
ZODIACOR5K3
Ontologies - Pathways
QuickGOA6NET4
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5K3
Atlas of Cancer Signalling NetworkOR5K3
Wikipedia pathwaysOR5K3
Orthology - Evolution
OrthoDB403277
GeneTree (enSembl)ENSG00000206536
Phylogenetic Trees/Animal Genes : TreeFamOR5K3
HOVERGENA6NET4
HOGENOMA6NET4
Homologs : HomoloGeneOR5K3
Homology/Alignments : Family Browser (UCSC)OR5K3
Gene fusions - Rearrangements
Tumor Fusion PortalOR5K3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5K3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5K3
dbVarOR5K3
ClinVarOR5K3
1000_GenomesOR5K3 
Exome Variant ServerOR5K3
ExAC (Exome Aggregation Consortium)ENSG00000206536
GNOMAD BrowserENSG00000206536
Genetic variants : HAPMAP403277
Genomic Variants (DGV)OR5K3 [DGVbeta]
DECIPHEROR5K3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5K3 
Mutations
ICGC Data PortalOR5K3 
TCGA Data PortalOR5K3 
Broad Tumor PortalOR5K3
OASIS PortalOR5K3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5K3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5K3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5K3
DgiDB (Drug Gene Interaction Database)OR5K3
DoCM (Curated mutations)OR5K3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5K3 (select a term)
intoGenOR5K3
Cancer3DOR5K3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR5K3
MedgenOR5K3
Genetic Testing Registry OR5K3
NextProtA6NET4 [Medical]
TSGene403277
GENETestsOR5K3
Target ValidationOR5K3
Huge Navigator OR5K3 [HugePedia]
snp3D : Map Gene to Disease403277
BioCentury BCIQOR5K3
ClinGenOR5K3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD403277
Chemical/Pharm GKB GenePA134984948
Clinical trialOR5K3
Miscellaneous
canSAR (ICR)OR5K3 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5K3
EVEXOR5K3
GoPubMedOR5K3
iHOPOR5K3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:08:40 CET 2017

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