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OR5K4 (olfactory receptor family 5 subfamily K member 4)

Identity

Alias_namesolfactory receptor, family 5, subfamily K, member 4
Other alias-
HGNC (Hugo) OR5K4
LocusID (NCBI) 403278
Atlas_Id 71437
Location 3q11.2  [Link to chromosome band 3q11]
Location_base_pair Starts at 98353854 and ends at 98354819 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5K4   31291
Cards
Entrez_Gene (NCBI)OR5K4  403278  olfactory receptor family 5 subfamily K member 4
Aliases
GeneCards (Weizmann)OR5K4
Ensembl hg19 (Hinxton)ENSG00000196098 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196098 [Gene_View]  chr3:98353854-98354819 [Contig_View]  OR5K4 [Vega]
ICGC DataPortalENSG00000196098
TCGA cBioPortalOR5K4
AceView (NCBI)OR5K4
Genatlas (Paris)OR5K4
WikiGenes403278
SOURCE (Princeton)OR5K4
Genetics Home Reference (NIH)OR5K4
Genomic and cartography
GoldenPath hg38 (UCSC)OR5K4  -     chr3:98353854-98354819 +  3q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5K4  -     3q11.2   [Description]    (hg19-Feb_2009)
EnsemblOR5K4 - 3q11.2 [CytoView hg19]  OR5K4 - 3q11.2 [CytoView hg38]
Mapping of homologs : NCBIOR5K4 [Mapview hg19]  OR5K4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005517
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5K4
Cluster EST : UnigeneHs.554710 [ NCBI ]
CGAP (NCI)Hs.554710
Alternative Splicing GalleryENSG00000196098
Gene ExpressionOR5K4 [ NCBI-GEO ]   OR5K4 [ EBI - ARRAY_EXPRESS ]   OR5K4 [ SEEK ]   OR5K4 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5K4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)403278
GTEX Portal (Tissue expression)OR5K4
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NMS3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NMS3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NMS3
Splice isoforms : SwissVarA6NMS3
PhosPhoSitePlusA6NMS3
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5K4
DMDM Disease mutations403278
Blocks (Seattle)OR5K4
SuperfamilyA6NMS3
Human Protein AtlasENSG00000196098
Peptide AtlasA6NMS3
HPRD17764
IPIIPI00470613   
Protein Interaction databases
DIP (DOE-UCLA)A6NMS3
IntAct (EBI)A6NMS3
FunCoupENSG00000196098
BioGRIDOR5K4
STRING (EMBL)OR5K4
ZODIACOR5K4
Ontologies - Pathways
QuickGOA6NMS3
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5K4
Atlas of Cancer Signalling NetworkOR5K4
Wikipedia pathwaysOR5K4
Orthology - Evolution
OrthoDB403278
GeneTree (enSembl)ENSG00000196098
Phylogenetic Trees/Animal Genes : TreeFamOR5K4
HOVERGENA6NMS3
HOGENOMA6NMS3
Homologs : HomoloGeneOR5K4
Homology/Alignments : Family Browser (UCSC)OR5K4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5K4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5K4
dbVarOR5K4
ClinVarOR5K4
1000_GenomesOR5K4 
Exome Variant ServerOR5K4
ExAC (Exome Aggregation Consortium)OR5K4 (select the gene name)
Genetic variants : HAPMAP403278
Genomic Variants (DGV)OR5K4 [DGVbeta]
DECIPHEROR5K4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5K4 
Mutations
ICGC Data PortalOR5K4 
TCGA Data PortalOR5K4 
Broad Tumor PortalOR5K4
OASIS PortalOR5K4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5K4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5K4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5K4
DgiDB (Drug Gene Interaction Database)OR5K4
DoCM (Curated mutations)OR5K4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5K4 (select a term)
intoGenOR5K4
Cancer3DOR5K4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5K4
Genetic Testing Registry OR5K4
NextProtA6NMS3 [Medical]
TSGene403278
GENETestsOR5K4
Target ValidationOR5K4
Huge Navigator OR5K4 [HugePedia]
snp3D : Map Gene to Disease403278
BioCentury BCIQOR5K4
ClinGenOR5K4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD403278
Chemical/Pharm GKB GenePA134945625
Clinical trialOR5K4
Miscellaneous
canSAR (ICR)OR5K4 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5K4
EVEXOR5K4
GoPubMedOR5K4
iHOPOR5K4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:26 CEST 2017

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