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OR5L1 (olfactory receptor family 5 subfamily L member 1 (gene/pseudogene))

Identity

Alias_namesolfactory receptor, family 5, subfamily L, member 1 (gene/pseudogene)
Alias_symbol (synonym)OST262
Other aliasOR11-151
HGNC (Hugo) OR5L1
LocusID (NCBI) 219437
Atlas_Id 71438
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 55811367 and ends at 55812476 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OR5L1   8350
Cards
Entrez_Gene (NCBI)OR5L1  219437  olfactory receptor family 5 subfamily L member 1 (gene/pseudogene)
AliasesOR11-151; OST262
GeneCards (Weizmann)OR5L1
Ensembl hg19 (Hinxton)ENSG00000279395 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000279395 [Gene_View]  ENSG00000279395 [Sequence]  chr11:55811367-55812476 [Contig_View]  OR5L1 [Vega]
ICGC DataPortalENSG00000279395
TCGA cBioPortalOR5L1
AceView (NCBI)OR5L1
Genatlas (Paris)OR5L1
WikiGenes219437
SOURCE (Princeton)OR5L1
Genetics Home Reference (NIH)OR5L1
Genomic and cartography
GoldenPath hg38 (UCSC)OR5L1  -     chr11:55811367-55812476 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5L1  -     11q12.1   [Description]    (hg19-Feb_2009)
GoldenPathOR5L1 - 11q12.1 [CytoView hg19]  OR5L1 - 11q12.1 [CytoView hg38]
ImmunoBaseENSG00000279395
Mapping of homologs : NCBIOR5L1 [Mapview hg19]  OR5L1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC109249 BC109250 BC136939
RefSeq transcript (Entrez)NM_001004738
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5L1
Alternative Splicing GalleryENSG00000279395
Gene ExpressionOR5L1 [ NCBI-GEO ]   OR5L1 [ EBI - ARRAY_EXPRESS ]   OR5L1 [ SEEK ]   OR5L1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219437
GTEX Portal (Tissue expression)OR5L1
Human Protein AtlasENSG00000279395-OR5L1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGL2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGL2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGL2
Splice isoforms : SwissVarQ8NGL2
PhosPhoSitePlusQ8NGL2
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR5L1
DMDM Disease mutations219437
Blocks (Seattle)OR5L1
SuperfamilyQ8NGL2
Human Protein Atlas [tissue]ENSG00000279395-OR5L1 [tissue]
Peptide AtlasQ8NGL2
HPRD15045
IPIIPI00169050   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGL2
IntAct (EBI)Q8NGL2
FunCoupENSG00000279395
BioGRIDOR5L1
STRING (EMBL)OR5L1
ZODIACOR5L1
Ontologies - Pathways
QuickGOQ8NGL2
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G protein-coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G protein-coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR5L1
Atlas of Cancer Signalling NetworkOR5L1
Wikipedia pathwaysOR5L1
Orthology - Evolution
OrthoDB219437
GeneTree (enSembl)ENSG00000279395
Phylogenetic Trees/Animal Genes : TreeFamOR5L1
HOGENOMQ8NGL2
Homologs : HomoloGeneOR5L1
Homology/Alignments : Family Browser (UCSC)OR5L1
Gene fusions - Rearrangements
Fusion : QuiverOR5L1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5L1
dbVarOR5L1
ClinVarOR5L1
1000_GenomesOR5L1 
Exome Variant ServerOR5L1
ExAC (Exome Aggregation Consortium)ENSG00000279395
GNOMAD BrowserENSG00000279395
Varsome BrowserOR5L1
Genetic variants : HAPMAP219437
Genomic Variants (DGV)OR5L1 [DGVbeta]
DECIPHEROR5L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5L1 
Mutations
ICGC Data PortalOR5L1 
TCGA Data PortalOR5L1 
Broad Tumor PortalOR5L1
OASIS PortalOR5L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5L1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOR5L1
Mutations and Diseases : HGMDOR5L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5L1
DgiDB (Drug Gene Interaction Database)OR5L1
DoCM (Curated mutations)OR5L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5L1 (select a term)
intoGenOR5L1
Cancer3DOR5L1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR5L1
MedgenOR5L1
Genetic Testing Registry OR5L1
NextProtQ8NGL2 [Medical]
TSGene219437
GENETestsOR5L1
Target ValidationOR5L1
Huge Navigator OR5L1 [HugePedia]
snp3D : Map Gene to Disease219437
BioCentury BCIQOR5L1
ClinGenOR5L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219437
Chemical/Pharm GKB GenePA32544
Clinical trialOR5L1
Miscellaneous
canSAR (ICR)OR5L1 (select the gene name)
DataMed IndexOR5L1
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5L1
EVEXOR5L1
GoPubMedOR5L1
iHOPOR5L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 18:00:04 CET 2020
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