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OR5L2 (olfactory receptor family 5 subfamily L member 2)

Identity

Alias_namesolfactory receptor, family 5, subfamily L, member 2
Alias_symbol (synonym)HTPCRX16
HSHTPCRX16
Other aliasOR11-153
HGNC (Hugo) OR5L2
LocusID (NCBI) 26338
Atlas_Id 71439
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 55827219 and ends at 55828154 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5L2   8351
Cards
Entrez_Gene (NCBI)OR5L2  26338  olfactory receptor family 5 subfamily L member 2
AliasesHSHTPCRX16; HTPCRX16; OR11-153
GeneCards (Weizmann)OR5L2
Ensembl hg19 (Hinxton)ENSG00000205030 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205030 [Gene_View]  chr11:55827219-55828154 [Contig_View]  OR5L2 [Vega]
ICGC DataPortalENSG00000205030
TCGA cBioPortalOR5L2
AceView (NCBI)OR5L2
Genatlas (Paris)OR5L2
WikiGenes26338
SOURCE (Princeton)OR5L2
Genetics Home Reference (NIH)OR5L2
Genomic and cartography
GoldenPath hg38 (UCSC)OR5L2  -     chr11:55827219-55828154 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5L2  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR5L2 - 11q12.1 [CytoView hg19]  OR5L2 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR5L2 [Mapview hg19]  OR5L2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC172290 X64990
RefSeq transcript (Entrez)NM_001004739
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5L2
Cluster EST : UnigeneHs.528356 [ NCBI ]
CGAP (NCI)Hs.528356
Alternative Splicing GalleryENSG00000205030
Gene ExpressionOR5L2 [ NCBI-GEO ]   OR5L2 [ EBI - ARRAY_EXPRESS ]   OR5L2 [ SEEK ]   OR5L2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26338
GTEX Portal (Tissue expression)OR5L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGL0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGL0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGL0
Splice isoforms : SwissVarQ8NGL0
PhosPhoSitePlusQ8NGL0
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5L2
DMDM Disease mutations26338
Blocks (Seattle)OR5L2
SuperfamilyQ8NGL0
Human Protein AtlasENSG00000205030
Peptide AtlasQ8NGL0
HPRD15046
IPIIPI00386344   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGL0
IntAct (EBI)Q8NGL0
FunCoupENSG00000205030
BioGRIDOR5L2
STRING (EMBL)OR5L2
ZODIACOR5L2
Ontologies - Pathways
QuickGOQ8NGL0
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5L2
Atlas of Cancer Signalling NetworkOR5L2
Wikipedia pathwaysOR5L2
Orthology - Evolution
OrthoDB26338
GeneTree (enSembl)ENSG00000205030
Phylogenetic Trees/Animal Genes : TreeFamOR5L2
HOVERGENQ8NGL0
HOGENOMQ8NGL0
Homologs : HomoloGeneOR5L2
Homology/Alignments : Family Browser (UCSC)OR5L2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5L2
dbVarOR5L2
ClinVarOR5L2
1000_GenomesOR5L2 
Exome Variant ServerOR5L2
ExAC (Exome Aggregation Consortium)OR5L2 (select the gene name)
Genetic variants : HAPMAP26338
Genomic Variants (DGV)OR5L2 [DGVbeta]
DECIPHEROR5L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5L2 
Mutations
ICGC Data PortalOR5L2 
TCGA Data PortalOR5L2 
Broad Tumor PortalOR5L2
OASIS PortalOR5L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5L2
DgiDB (Drug Gene Interaction Database)OR5L2
DoCM (Curated mutations)OR5L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5L2 (select a term)
intoGenOR5L2
Cancer3DOR5L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5L2
Genetic Testing Registry OR5L2
NextProtQ8NGL0 [Medical]
TSGene26338
GENETestsOR5L2
Target ValidationOR5L2
Huge Navigator OR5L2 [HugePedia]
snp3D : Map Gene to Disease26338
BioCentury BCIQOR5L2
ClinGenOR5L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26338
Chemical/Pharm GKB GenePA32545
Clinical trialOR5L2
Miscellaneous
canSAR (ICR)OR5L2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5L2
EVEXOR5L2
GoPubMedOR5L2
iHOPOR5L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:34:46 CEST 2017

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