Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR5M1 (olfactory receptor family 5 subfamily M member 1)

Identity

Alias_namesolfactory receptor, family 5, subfamily M, member 1
Alias_symbol (synonym)OST050
Other aliasOR11-208
HGNC (Hugo) OR5M1
LocusID (NCBI) 390168
Atlas_Id 71440
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 56612555 and ends at 56613502 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5M1   8352
Cards
Entrez_Gene (NCBI)OR5M1  390168  olfactory receptor family 5 subfamily M member 1
AliasesOR11-208; OST050
GeneCards (Weizmann)OR5M1
Ensembl hg19 (Hinxton)ENSG00000255012 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255012 [Gene_View]  chr11:56612555-56613502 [Contig_View]  OR5M1 [Vega]
ICGC DataPortalENSG00000255012
TCGA cBioPortalOR5M1
AceView (NCBI)OR5M1
Genatlas (Paris)OR5M1
WikiGenes390168
SOURCE (Princeton)OR5M1
Genetics Home Reference (NIH)OR5M1
Genomic and cartography
GoldenPath hg38 (UCSC)OR5M1  -     chr11:56612555-56613502 -  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5M1  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR5M1 - 11q12.1 [CytoView hg19]  OR5M1 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR5M1 [Mapview hg19]  OR5M1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001004740
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5M1
Cluster EST : UnigeneHs.553751 [ NCBI ]
CGAP (NCI)Hs.553751
Alternative Splicing GalleryENSG00000255012
Gene ExpressionOR5M1 [ NCBI-GEO ]   OR5M1 [ EBI - ARRAY_EXPRESS ]   OR5M1 [ SEEK ]   OR5M1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5M1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390168
GTEX Portal (Tissue expression)OR5M1
Human Protein AtlasENSG00000255012-OR5M1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGP8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGP8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGP8
Splice isoforms : SwissVarQ8NGP8
PhosPhoSitePlusQ8NGP8
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5M1
DMDM Disease mutations390168
Blocks (Seattle)OR5M1
SuperfamilyQ8NGP8
Human Protein Atlas [tissue]ENSG00000255012-OR5M1 [tissue]
Peptide AtlasQ8NGP8
HPRD17765
IPIIPI00303583   IPI00409740   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGP8
IntAct (EBI)Q8NGP8
FunCoupENSG00000255012
BioGRIDOR5M1
STRING (EMBL)OR5M1
ZODIACOR5M1
Ontologies - Pathways
QuickGOQ8NGP8
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5M1
Atlas of Cancer Signalling NetworkOR5M1
Wikipedia pathwaysOR5M1
Orthology - Evolution
OrthoDB390168
GeneTree (enSembl)ENSG00000255012
Phylogenetic Trees/Animal Genes : TreeFamOR5M1
HOVERGENQ8NGP8
HOGENOMQ8NGP8
Homologs : HomoloGeneOR5M1
Homology/Alignments : Family Browser (UCSC)OR5M1
Gene fusions - Rearrangements
Fusion: Tumor Portal OR5M1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5M1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5M1
dbVarOR5M1
ClinVarOR5M1
1000_GenomesOR5M1 
Exome Variant ServerOR5M1
ExAC (Exome Aggregation Consortium)ENSG00000255012
GNOMAD BrowserENSG00000255012
Genetic variants : HAPMAP390168
Genomic Variants (DGV)OR5M1 [DGVbeta]
DECIPHEROR5M1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5M1 
Mutations
ICGC Data PortalOR5M1 
TCGA Data PortalOR5M1 
Broad Tumor PortalOR5M1
OASIS PortalOR5M1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5M1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5M1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5M1
DgiDB (Drug Gene Interaction Database)OR5M1
DoCM (Curated mutations)OR5M1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5M1 (select a term)
intoGenOR5M1
Cancer3DOR5M1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5M1
Genetic Testing Registry OR5M1
NextProtQ8NGP8 [Medical]
TSGene390168
GENETestsOR5M1
Target ValidationOR5M1
Huge Navigator OR5M1 [HugePedia]
snp3D : Map Gene to Disease390168
BioCentury BCIQOR5M1
ClinGenOR5M1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390168
Chemical/Pharm GKB GenePA32546
Clinical trialOR5M1
Miscellaneous
canSAR (ICR)OR5M1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5M1
EVEXOR5M1
GoPubMedOR5M1
iHOPOR5M1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:21:00 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.