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OR5P2 (olfactory receptor family 5 subfamily P member 2)

Identity

Alias_namesolfactory receptor, family 5, subfamily P, member 2
Alias_symbol (synonym)JCG3
Other aliasJCG4
HGNC (Hugo) OR5P2
LocusID (NCBI) 120065
Atlas_Id 71446
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 7795974 and ends at 7796942 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5P2   14783
Cards
Entrez_Gene (NCBI)OR5P2  120065  olfactory receptor family 5 subfamily P member 2
AliasesJCG3; JCG4
GeneCards (Weizmann)OR5P2
Ensembl hg19 (Hinxton)ENSG00000183303 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183303 [Gene_View]  chr11:7795974-7796942 [Contig_View]  OR5P2 [Vega]
ICGC DataPortalENSG00000183303
TCGA cBioPortalOR5P2
AceView (NCBI)OR5P2
Genatlas (Paris)OR5P2
WikiGenes120065
SOURCE (Princeton)OR5P2
Genetics Home Reference (NIH)OR5P2
Genomic and cartography
GoldenPath hg38 (UCSC)OR5P2  -     chr11:7795974-7796942 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5P2  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR5P2 - 11p15.4 [CytoView hg19]  OR5P2 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR5P2 [Mapview hg19]  OR5P2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF173006 AF220494 BC101710 BC113557 HQ258379
RefSeq transcript (Entrez)NM_153444
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_187583 NW_011332695
Consensus coding sequences : CCDS (NCBI)OR5P2
Cluster EST : UnigeneHs.351824 [ NCBI ]
CGAP (NCI)Hs.351824
Alternative Splicing GalleryENSG00000183303
Gene ExpressionOR5P2 [ NCBI-GEO ]   OR5P2 [ EBI - ARRAY_EXPRESS ]   OR5P2 [ SEEK ]   OR5P2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5P2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)120065
GTEX Portal (Tissue expression)OR5P2
Human Protein AtlasENSG00000183303-OR5P2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WZ92   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WZ92  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WZ92
Splice isoforms : SwissVarQ8WZ92
PhosPhoSitePlusQ8WZ92
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5P2
DMDM Disease mutations120065
Blocks (Seattle)OR5P2
SuperfamilyQ8WZ92
Human Protein Atlas [tissue]ENSG00000183303-OR5P2 [tissue]
Peptide AtlasQ8WZ92
HPRD17769
IPIIPI00103896   
Protein Interaction databases
DIP (DOE-UCLA)Q8WZ92
IntAct (EBI)Q8WZ92
FunCoupENSG00000183303
BioGRIDOR5P2
STRING (EMBL)OR5P2
ZODIACOR5P2
Ontologies - Pathways
QuickGOQ8WZ92
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5P2
Atlas of Cancer Signalling NetworkOR5P2
Wikipedia pathwaysOR5P2
Orthology - Evolution
OrthoDB120065
GeneTree (enSembl)ENSG00000183303
Phylogenetic Trees/Animal Genes : TreeFamOR5P2
HOVERGENQ8WZ92
HOGENOMQ8WZ92
Homologs : HomoloGeneOR5P2
Homology/Alignments : Family Browser (UCSC)OR5P2
Gene fusions - Rearrangements
Fusion: Tumor Portal OR5P2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5P2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5P2
dbVarOR5P2
ClinVarOR5P2
1000_GenomesOR5P2 
Exome Variant ServerOR5P2
ExAC (Exome Aggregation Consortium)ENSG00000183303
GNOMAD BrowserENSG00000183303
Genetic variants : HAPMAP120065
Genomic Variants (DGV)OR5P2 [DGVbeta]
DECIPHEROR5P2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5P2 
Mutations
ICGC Data PortalOR5P2 
TCGA Data PortalOR5P2 
Broad Tumor PortalOR5P2
OASIS PortalOR5P2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5P2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5P2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5P2
DgiDB (Drug Gene Interaction Database)OR5P2
DoCM (Curated mutations)OR5P2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5P2 (select a term)
intoGenOR5P2
Cancer3DOR5P2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5P2
Genetic Testing Registry OR5P2
NextProtQ8WZ92 [Medical]
TSGene120065
GENETestsOR5P2
Target ValidationOR5P2
Huge Navigator OR5P2 [HugePedia]
snp3D : Map Gene to Disease120065
BioCentury BCIQOR5P2
ClinGenOR5P2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD120065
Chemical/Pharm GKB GenePA32561
Clinical trialOR5P2
Miscellaneous
canSAR (ICR)OR5P2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5P2
EVEXOR5P2
GoPubMedOR5P2
iHOPOR5P2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:21:02 CET 2017

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