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OR5R1 (olfactory receptor family 5 subfamily R member 1 (gene/pseudogene))

Identity

Alias_namesOR5R1P
olfactory receptor, family 5, subfamily R, member 1 (gene/pseudogene)
Other aliasOR11-185
HGNC (Hugo) OR5R1
LocusID (NCBI) 219479
Atlas_Id 71448
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 56417258 and ends at 56418232 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5R1   14841
Cards
Entrez_Gene (NCBI)OR5R1  219479  olfactory receptor family 5 subfamily R member 1 (gene/pseudogene)
AliasesOR11-185; OR5R1P
GeneCards (Weizmann)OR5R1
Ensembl hg19 (Hinxton)ENSG00000174942 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174942 [Gene_View]  chr11:56417258-56418232 [Contig_View]  OR5R1 [Vega]
ICGC DataPortalENSG00004174962,/a>
TCGA cBioPortalOR5R1
AceView (NCBI)OR5R1
Genatlas (Paris)OR5R1
WikiGenes219479
SOURCE (Princeton)OR5R1
Genetics Home Reference (NIH)OR5R1
Genomic and cartography
GoldenPath hg38 (UCSC)OR5R1  -     chr11:56417258-56418232 -  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5R1  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR5R1 - 11q12.1 [CytoView hg19]  OR5R1 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR5R1 [Mapview hg19]  OR5R1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001004744
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5R1
Cluster EST : UnigeneHs.553630 [ NCBI ]
CGAP (NCI)Hs.553630
Alternative Splicing GalleryENSG00000174942
Gene ExpressionOR5R1 [ NCBI-GEO ]   OR5R1 [ EBI - ARRAY_EXPRESS ]   OR5R1 [ SEEK ]   OR5R1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5R1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219479
GTEX Portal (Tissue expression)OR5R1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH85   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH85  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH85
Splice isoforms : SwissVarQ8NH85
PhosPhoSitePlusQ8NH85
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5R1
DMDM Disease mutations219479
Blocks (Seattle)OR5R1
SuperfamilyQ8NH85
Human Protein AtlasENSG00000174942
Peptide AtlasQ8NH85
HPRD15049
IPIIPI00169209   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH85
IntAct (EBI)Q8NH85
FunCoupENSG00000174942
BioGRIDOR5R1
STRING (EMBL)OR5R1
ZODIACOR5R1
Ontologies - Pathways
QuickGOQ8NH85
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5R1
Atlas of Cancer Signalling NetworkOR5R1
Wikipedia pathwaysOR5R1
Orthology - Evolution
OrthoDB219479
GeneTree (enSembl)ENSG00000174942
Phylogenetic Trees/Animal Genes : TreeFamOR5R1
HOVERGENQ8NH85
HOGENOMQ8NH85
Homologs : HomoloGeneOR5R1
Homology/Alignments : Family Browser (UCSC)OR5R1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5R1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5R1
dbVarOR5R1
ClinVarOR5R1
1000_GenomesOR5R1 
Exome Variant ServerOR5R1
ExAC (Exome Aggregation Consortium)OR5R1 (select the gene name)
Genetic variants : HAPMAP219479
Genomic Variants (DGV)OR5R1 [DGVbeta]
DECIPHEROR5R1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5R1 
Mutations
ICGC Data PortalOR5R1 
TCGA Data PortalOR5R1 
Broad Tumor PortalOR5R1
OASIS PortalOR5R1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5R1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5R1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5R1
DgiDB (Drug Gene Interaction Database)OR5R1
DoCM (Curated mutations)OR5R1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5R1 (select a term)
intoGenOR5R1
Cancer3DOR5R1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5R1
Genetic Testing Registry OR5R1
NextProtQ8NH85 [Medical]
TSGene219479
GENETestsOR5R1
Target ValidationOR5R1
Huge Navigator OR5R1 [HugePedia]
snp3D : Map Gene to Disease219479
BioCentury BCIQOR5R1
ClinGenOR5R1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219479
Chemical/Pharm GKB GenePA32564
Clinical trialOR5R1
Miscellaneous
canSAR (ICR)OR5R1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5R1
EVEXOR5R1
GoPubMedOR5R1
iHOPOR5R1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:28 CEST 2017

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