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OR5T1 (olfactory receptor family 5 subfamily T member 1)

Identity

Alias_namesOR5T1P
olfactory receptor, family 5, subfamily T, member 1
Other aliasOR11-179
HGNC (Hugo) OR5T1
LocusID (NCBI) 390155
Atlas_Id 71449
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 56275639 and ends at 56276619 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5T1   14821
Cards
Entrez_Gene (NCBI)OR5T1  390155  olfactory receptor family 5 subfamily T member 1
AliasesOR11-179; OR5T1P
GeneCards (Weizmann)OR5T1
Ensembl hg19 (Hinxton)ENSG00000181698 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181698 [Gene_View]  chr11:56275639-56276619 [Contig_View]  OR5T1 [Vega]
ICGC DataPortalENSG00000181698
TCGA cBioPortalOR5T1
AceView (NCBI)OR5T1
Genatlas (Paris)OR5T1
WikiGenes390155
SOURCE (Princeton)OR5T1
Genetics Home Reference (NIH)OR5T1
Genomic and cartography
GoldenPath hg38 (UCSC)OR5T1  -     chr11:56275639-56276619 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5T1  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR5T1 - 11q12.1 [CytoView hg19]  OR5T1 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR5T1 [Mapview hg19]  OR5T1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136992 BC136993
RefSeq transcript (Entrez)NM_001004745
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5T1
Cluster EST : UnigeneHs.553747 [ NCBI ]
CGAP (NCI)Hs.553747
Alternative Splicing GalleryENSG00000181698
Gene ExpressionOR5T1 [ NCBI-GEO ]   OR5T1 [ EBI - ARRAY_EXPRESS ]   OR5T1 [ SEEK ]   OR5T1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5T1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390155
GTEX Portal (Tissue expression)OR5T1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NG75   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NG75  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NG75
Splice isoforms : SwissVarQ8NG75
PhosPhoSitePlusQ8NG75
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5T1
DMDM Disease mutations390155
Blocks (Seattle)OR5T1
SuperfamilyQ8NG75
Human Protein AtlasENSG00000181698
Peptide AtlasQ8NG75
HPRD15050
IPIIPI00168932   
Protein Interaction databases
DIP (DOE-UCLA)Q8NG75
IntAct (EBI)Q8NG75
FunCoupENSG00000181698
BioGRIDOR5T1
STRING (EMBL)OR5T1
ZODIACOR5T1
Ontologies - Pathways
QuickGOQ8NG75
Ontology : AmiGOdopamine neurotransmitter receptor activity, coupled via Gi/Go  synaptic transmission, dopaminergic  adrenergic receptor activity  olfactory receptor activity  plasma membrane  integral component of plasma membrane  negative regulation of adenylate cyclase activity  adenylate cyclase-inhibiting dopamine receptor signaling pathway  response to toxic substance  regulation of dopamine secretion  synaptic vesicle membrane  dopamine binding  response to drug  regulation of potassium ion transport  behavioral response to cocaine  behavioral response to ethanol  detection of chemical stimulus involved in sensory perception of smell  negative regulation of cytosolic calcium ion concentration  negative regulation of synaptic transmission, glutamatergic  phospholipase C-activating dopamine receptor signaling pathway  adenylate cyclase-activating adrenergic receptor signaling pathway  negative regulation of voltage-gated calcium channel activity  
Ontology : EGO-EBIdopamine neurotransmitter receptor activity, coupled via Gi/Go  synaptic transmission, dopaminergic  adrenergic receptor activity  olfactory receptor activity  plasma membrane  integral component of plasma membrane  negative regulation of adenylate cyclase activity  adenylate cyclase-inhibiting dopamine receptor signaling pathway  response to toxic substance  regulation of dopamine secretion  synaptic vesicle membrane  dopamine binding  response to drug  regulation of potassium ion transport  behavioral response to cocaine  behavioral response to ethanol  detection of chemical stimulus involved in sensory perception of smell  negative regulation of cytosolic calcium ion concentration  negative regulation of synaptic transmission, glutamatergic  phospholipase C-activating dopamine receptor signaling pathway  adenylate cyclase-activating adrenergic receptor signaling pathway  negative regulation of voltage-gated calcium channel activity  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5T1
Atlas of Cancer Signalling NetworkOR5T1
Wikipedia pathwaysOR5T1
Orthology - Evolution
OrthoDB390155
GeneTree (enSembl)ENSG00000181698
Phylogenetic Trees/Animal Genes : TreeFamOR5T1
HOVERGENQ8NG75
HOGENOMQ8NG75
Homologs : HomoloGeneOR5T1
Homology/Alignments : Family Browser (UCSC)OR5T1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5T1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5T1
dbVarOR5T1
ClinVarOR5T1
1000_GenomesOR5T1 
Exome Variant ServerOR5T1
ExAC (Exome Aggregation Consortium)OR5T1 (select the gene name)
Genetic variants : HAPMAP390155
Genomic Variants (DGV)OR5T1 [DGVbeta]
DECIPHEROR5T1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5T1 
Mutations
ICGC Data PortalOR5T1 
TCGA Data PortalOR5T1 
Broad Tumor PortalOR5T1
OASIS PortalOR5T1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5T1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5T1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5T1
DgiDB (Drug Gene Interaction Database)OR5T1
DoCM (Curated mutations)OR5T1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5T1 (select a term)
intoGenOR5T1
Cancer3DOR5T1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5T1
Genetic Testing Registry OR5T1
NextProtQ8NG75 [Medical]
TSGene390155
GENETestsOR5T1
Target ValidationOR5T1
Huge Navigator OR5T1 [HugePedia]
snp3D : Map Gene to Disease390155
BioCentury BCIQOR5T1
ClinGenOR5T1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390155
Chemical/Pharm GKB GenePA32566
Clinical trialOR5T1
Miscellaneous
canSAR (ICR)OR5T1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5T1
EVEXOR5T1
GoPubMedOR5T1
iHOPOR5T1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:28 CEST 2017

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