Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR5T2 (olfactory receptor, family 5, subfamily T, member 2)

Identity

Alias_namesolfactory receptor, family 5, subfamily T, member 2
Other aliasOR11-177
HGNC (Hugo) OR5T2
LocusID (NCBI) 219464
Atlas_Id 71450
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 55999582 and ends at 56000661 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5T2   15296
Cards
Entrez_Gene (NCBI)OR5T2  219464  olfactory receptor, family 5, subfamily T, member 2
AliasesOR11-177
GeneCards (Weizmann)OR5T2
Ensembl hg19 (Hinxton)ENSG00000181718 [Gene_View]  chr11:55999582-56000661 [Contig_View]  OR5T2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000181718 [Gene_View]  chr11:55999582-56000661 [Contig_View]  OR5T2 [Vega]
ICGC DataPortalENSG00000181718
TCGA cBioPortalOR5T2
AceView (NCBI)OR5T2
Genatlas (Paris)OR5T2
WikiGenes219464
SOURCE (Princeton)OR5T2
Genetics Home Reference (NIH)OR5T2
Genomic and cartography
GoldenPath hg19 (UCSC)OR5T2  -     chr11:55999582-56000661 -  11q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR5T2  -     11q12.1   [Description]    (hg38-Dec_2013)
EnsemblOR5T2 - 11q12.1 [CytoView hg19]  OR5T2 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR5T2 [Mapview hg19]  OR5T2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136876
RefSeq transcript (Entrez)NM_001004746
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_003871073 NW_004929380
Consensus coding sequences : CCDS (NCBI)OR5T2
Cluster EST : UnigeneHs.553627 [ NCBI ]
CGAP (NCI)Hs.553627
Alternative Splicing GalleryENSG00000181718
Gene ExpressionOR5T2 [ NCBI-GEO ]   OR5T2 [ EBI - ARRAY_EXPRESS ]   OR5T2 [ SEEK ]   OR5T2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5T2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219464
GTEX Portal (Tissue expression)OR5T2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGG2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGG2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGG2
Splice isoforms : SwissVarQ8NGG2
PhosPhoSitePlusQ8NGG2
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5T2
DMDM Disease mutations219464
Blocks (Seattle)OR5T2
SuperfamilyQ8NGG2
Human Protein AtlasENSG00000181718
Peptide AtlasQ8NGG2
HPRD15051
IPIIPI00169007   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGG2
IntAct (EBI)Q8NGG2
FunCoupENSG00000181718
BioGRIDOR5T2
STRING (EMBL)OR5T2
ZODIACOR5T2
Ontologies - Pathways
QuickGOQ8NGG2
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5T2
Atlas of Cancer Signalling NetworkOR5T2
Wikipedia pathwaysOR5T2
Orthology - Evolution
OrthoDB219464
GeneTree (enSembl)ENSG00000181718
Phylogenetic Trees/Animal Genes : TreeFamOR5T2
HOVERGENQ8NGG2
HOGENOMQ8NGG2
Homologs : HomoloGeneOR5T2
Homology/Alignments : Family Browser (UCSC)OR5T2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5T2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5T2
dbVarOR5T2
ClinVarOR5T2
1000_GenomesOR5T2 
Exome Variant ServerOR5T2
ExAC (Exome Aggregation Consortium)OR5T2 (select the gene name)
Genetic variants : HAPMAP219464
Genomic Variants (DGV)OR5T2 [DGVbeta]
DECIPHER (Syndromes)11:55999582-56000661  ENSG00000181718
CONAN: Copy Number AnalysisOR5T2 
Mutations
ICGC Data PortalOR5T2 
TCGA Data PortalOR5T2 
Broad Tumor PortalOR5T2
OASIS PortalOR5T2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5T2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5T2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5T2
DgiDB (Drug Gene Interaction Database)OR5T2
DoCM (Curated mutations)OR5T2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5T2 (select a term)
intoGenOR5T2
Cancer3DOR5T2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5T2
Genetic Testing Registry OR5T2
NextProtQ8NGG2 [Medical]
TSGene219464
GENETestsOR5T2
Huge Navigator OR5T2 [HugePedia]
snp3D : Map Gene to Disease219464
BioCentury BCIQOR5T2
ClinGenOR5T2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219464
Chemical/Pharm GKB GenePA32567
Clinical trialOR5T2
Miscellaneous
canSAR (ICR)OR5T2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5T2
EVEXOR5T2
GoPubMedOR5T2
iHOPOR5T2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:37:04 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.