Atlas of Genetics and Cytogenetics in Oncology and Haematology

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OR5T3 (olfactory receptor family 5 subfamily T member 3)

Identity

Alias_namesolfactory receptor, family 5, subfamily T, member 3
Alias_symbol (synonym)OR5T3Q
Other aliasOR11-178
HGNC (Hugo) OR5T3
LocusID (NCBI) 390154
Atlas_Id 71451
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 56252200 and ends at 56253222 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OR5T3   15297
Cards
Entrez_Gene (NCBI)OR5T3  390154  olfactory receptor family 5 subfamily T member 3
AliasesOR11-178; OR5T3Q
GeneCards (Weizmann)OR5T3
Ensembl hg19 (Hinxton)ENSG00000172489 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172489 [Gene_View]  ENSG00000172489 [Sequence]  chr11:56252200-56253222 [Contig_View]  OR5T3 [Vega]
ICGC DataPortalENSG00000172489
TCGA cBioPortalOR5T3
AceView (NCBI)OR5T3
Genatlas (Paris)OR5T3
WikiGenes390154
SOURCE (Princeton)OR5T3
Genetics Home Reference (NIH)OR5T3
Genomic and cartography
GoldenPath hg38 (UCSC)OR5T3  -     chr11:56252200-56253222 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5T3  -     11q12.1   [Description]    (hg19-Feb_2009)
GoldenPathOR5T3 - 11q12.1 [CytoView hg19]  OR5T3 - 11q12.1 [CytoView hg38]
ImmunoBaseENSG00000172489
Mapping of homologs : NCBIOR5T3 [Mapview hg19]  OR5T3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001004747
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5T3
Cluster EST : UnigeneHs.553746 [ NCBI ]
CGAP (NCI)Hs.553746
Alternative Splicing GalleryENSG00000172489
Gene ExpressionOR5T3 [ NCBI-GEO ]   OR5T3 [ EBI - ARRAY_EXPRESS ]   OR5T3 [ SEEK ]   OR5T3 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5T3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390154
GTEX Portal (Tissue expression)OR5T3
Human Protein AtlasENSG00000172489-OR5T3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGG3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGG3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGG3
Splice isoforms : SwissVarQ8NGG3
PhosPhoSitePlusQ8NGG3
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5T3
DMDM Disease mutations390154
Blocks (Seattle)OR5T3
SuperfamilyQ8NGG3
Human Protein Atlas [tissue]ENSG00000172489-OR5T3 [tissue]
Peptide AtlasQ8NGG3
HPRD15052
IPIIPI00169008   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGG3
IntAct (EBI)Q8NGG3
FunCoupENSG00000172489
BioGRIDOR5T3
STRING (EMBL)OR5T3
ZODIACOR5T3
Ontologies - Pathways
QuickGOQ8NGG3
Ontology : AmiGOolfactory receptor activity  G-protein coupled serotonin receptor activity  plasma membrane  integral component of membrane  neurotransmitter receptor activity  detection of chemical stimulus involved in sensory perception of smell  G-protein coupled serotonin receptor signaling pathway  
Ontology : EGO-EBIolfactory receptor activity  G-protein coupled serotonin receptor activity  plasma membrane  integral component of membrane  neurotransmitter receptor activity  detection of chemical stimulus involved in sensory perception of smell  G-protein coupled serotonin receptor signaling pathway  
NDEx NetworkOR5T3
Atlas of Cancer Signalling NetworkOR5T3
Wikipedia pathwaysOR5T3
Orthology - Evolution
OrthoDB390154
GeneTree (enSembl)ENSG00000172489
Phylogenetic Trees/Animal Genes : TreeFamOR5T3
HOGENOMQ8NGG3
Homologs : HomoloGeneOR5T3
Homology/Alignments : Family Browser (UCSC)OR5T3
Gene fusions - Rearrangements
Fusion : QuiverOR5T3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5T3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5T3
dbVarOR5T3
ClinVarOR5T3
1000_GenomesOR5T3 
Exome Variant ServerOR5T3
ExAC (Exome Aggregation Consortium)ENSG00000172489
GNOMAD BrowserENSG00000172489
Varsome BrowserOR5T3
Genetic variants : HAPMAP390154
Genomic Variants (DGV)OR5T3 [DGVbeta]
DECIPHEROR5T3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5T3 
Mutations
ICGC Data PortalOR5T3 
TCGA Data PortalOR5T3 
Broad Tumor PortalOR5T3
OASIS PortalOR5T3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5T3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5T3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5T3
DgiDB (Drug Gene Interaction Database)OR5T3
DoCM (Curated mutations)OR5T3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5T3 (select a term)
intoGenOR5T3
Cancer3DOR5T3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR5T3
MedgenOR5T3
Genetic Testing Registry OR5T3
NextProtQ8NGG3 [Medical]
TSGene390154
GENETestsOR5T3
Target ValidationOR5T3
Huge Navigator OR5T3 [HugePedia]
snp3D : Map Gene to Disease390154
BioCentury BCIQOR5T3
ClinGenOR5T3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390154
Chemical/Pharm GKB GenePA32568
Clinical trialOR5T3
Miscellaneous
canSAR (ICR)OR5T3 (select the gene name)
DataMed IndexOR5T3
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5T3
EVEXOR5T3
GoPubMedOR5T3
iHOPOR5T3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 7 17:41:56 CEST 2019
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