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OR5V1 (olfactory receptor family 5 subfamily V member 1)

Identity

Alias_namesolfactory receptor, family 5, subfamily V, member 1
Alias_symbol (synonym)hs6M1-21
Other alias6M1-21
HGNC (Hugo) OR5V1
LocusID (NCBI) 81696
Atlas_Id 71452
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 29355230 and ends at 29356277 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ANKRD13C (1p31.1) / OR5V1 (6p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(1;6)(p31;p22) ANKRD13C/OR5V1


External links

Nomenclature
HGNC (Hugo)OR5V1   13972
Cards
Entrez_Gene (NCBI)OR5V1  81696  olfactory receptor family 5 subfamily V member 1
Aliases6M1-21; hs6M1-21
GeneCards (Weizmann)OR5V1
Ensembl hg19 (Hinxton)ENSG00000243729 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000243729 [Gene_View]  ENSG00000243729 [Sequence]  chr6:29355230-29356277 [Contig_View]  OR5V1 [Vega]
ICGC DataPortalENSG00000243729
TCGA cBioPortalOR5V1
AceView (NCBI)OR5V1
Genatlas (Paris)OR5V1
WikiGenes81696
SOURCE (Princeton)OR5V1
Genetics Home Reference (NIH)OR5V1
Genomic and cartography
GoldenPath hg38 (UCSC)OR5V1  -     chr6:29355230-29356277 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5V1  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblOR5V1 - 6p22.1 [CytoView hg19]  OR5V1 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIOR5V1 [Mapview hg19]  OR5V1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ459859 BC069149 BC148487
RefSeq transcript (Entrez)NM_030876
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)OR5V1
Cluster EST : UnigeneHs.666316 [ NCBI ]
CGAP (NCI)Hs.666316
Alternative Splicing GalleryENSG00000243729
Gene ExpressionOR5V1 [ NCBI-GEO ]   OR5V1 [ EBI - ARRAY_EXPRESS ]   OR5V1 [ SEEK ]   OR5V1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5V1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81696
GTEX Portal (Tissue expression)OR5V1
Human Protein AtlasENSG00000243729-OR5V1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UGF6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UGF6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UGF6
Splice isoforms : SwissVarQ9UGF6
PhosPhoSitePlusQ9UGF6
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5V1
DMDM Disease mutations81696
Blocks (Seattle)OR5V1
SuperfamilyQ9UGF6
Human Protein Atlas [tissue]ENSG00000243729-OR5V1 [tissue]
Peptide AtlasQ9UGF6
HPRD17771
IPIIPI00005288   
Protein Interaction databases
DIP (DOE-UCLA)Q9UGF6
IntAct (EBI)Q9UGF6
FunCoupENSG00000243729
BioGRIDOR5V1
STRING (EMBL)OR5V1
ZODIACOR5V1
Ontologies - Pathways
QuickGOQ9UGF6
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR5V1
Atlas of Cancer Signalling NetworkOR5V1
Wikipedia pathwaysOR5V1
Orthology - Evolution
OrthoDB81696
GeneTree (enSembl)ENSG00000243729
Phylogenetic Trees/Animal Genes : TreeFamOR5V1
HOVERGENQ9UGF6
HOGENOMQ9UGF6
Homologs : HomoloGeneOR5V1
Homology/Alignments : Family Browser (UCSC)OR5V1
Gene fusions - Rearrangements
Fusion : QuiverOR5V1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5V1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5V1
dbVarOR5V1
ClinVarOR5V1
1000_GenomesOR5V1 
Exome Variant ServerOR5V1
ExAC (Exome Aggregation Consortium)ENSG00000243729
GNOMAD BrowserENSG00000243729
Varsome BrowserOR5V1
Genetic variants : HAPMAP81696
Genomic Variants (DGV)OR5V1 [DGVbeta]
DECIPHEROR5V1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5V1 
Mutations
ICGC Data PortalOR5V1 
TCGA Data PortalOR5V1 
Broad Tumor PortalOR5V1
OASIS PortalOR5V1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5V1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5V1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5V1
DgiDB (Drug Gene Interaction Database)OR5V1
DoCM (Curated mutations)OR5V1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5V1 (select a term)
intoGenOR5V1
Cancer3DOR5V1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR5V1
MedgenOR5V1
Genetic Testing Registry OR5V1
NextProtQ9UGF6 [Medical]
TSGene81696
GENETestsOR5V1
Target ValidationOR5V1
Huge Navigator OR5V1 [HugePedia]
snp3D : Map Gene to Disease81696
BioCentury BCIQOR5V1
ClinGenOR5V1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81696
Chemical/Pharm GKB GenePA32570
Clinical trialOR5V1
Miscellaneous
canSAR (ICR)OR5V1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5V1
EVEXOR5V1
GoPubMedOR5V1
iHOPOR5V1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:22:16 CEST 2018

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