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OR5W2 (olfactory receptor family 5 subfamily W member 2)

Identity

Alias_namesOR5W2P
OR5W3P
olfactory receptor, family 5, subfamily W, member 2
Other alias
HGNC (Hugo) OR5W2
LocusID (NCBI) 390148
Atlas_Id 71453
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 55913650 and ends at 55914582 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR5W2   15299
Cards
Entrez_Gene (NCBI)OR5W2  390148  olfactory receptor family 5 subfamily W member 2
AliasesOR5W2P; OR5W3P
GeneCards (Weizmann)OR5W2
Ensembl hg19 (Hinxton)ENSG00000187612 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187612 [Gene_View]  chr11:55913650-55914582 [Contig_View]  OR5W2 [Vega]
ICGC DataPortalENSG00000187612
TCGA cBioPortalOR5W2
AceView (NCBI)OR5W2
Genatlas (Paris)OR5W2
WikiGenes390148
SOURCE (Princeton)OR5W2
Genetics Home Reference (NIH)OR5W2
Genomic and cartography
GoldenPath hg38 (UCSC)OR5W2  -     chr11:55913650-55914582 -  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR5W2  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR5W2 - 11q12.1 [CytoView hg19]  OR5W2 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR5W2 [Mapview hg19]  OR5W2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001001960
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR5W2
Cluster EST : UnigeneHs.554526 [ NCBI ]
CGAP (NCI)Hs.554526
Alternative Splicing GalleryENSG00000187612
Gene ExpressionOR5W2 [ NCBI-GEO ]   OR5W2 [ EBI - ARRAY_EXPRESS ]   OR5W2 [ SEEK ]   OR5W2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR5W2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390148
GTEX Portal (Tissue expression)OR5W2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH69   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH69  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH69
Splice isoforms : SwissVarQ8NH69
PhosPhoSitePlusQ8NH69
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR5W2
DMDM Disease mutations390148
Blocks (Seattle)OR5W2
SuperfamilyQ8NH69
Human Protein AtlasENSG00000187612
Peptide AtlasQ8NH69
HPRD15054
IPIIPI00303696   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH69
IntAct (EBI)Q8NH69
FunCoupENSG00000187612
BioGRIDOR5W2
STRING (EMBL)OR5W2
ZODIACOR5W2
Ontologies - Pathways
QuickGOQ8NH69
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR5W2
Atlas of Cancer Signalling NetworkOR5W2
Wikipedia pathwaysOR5W2
Orthology - Evolution
OrthoDB390148
GeneTree (enSembl)ENSG00000187612
Phylogenetic Trees/Animal Genes : TreeFamOR5W2
HOVERGENQ8NH69
HOGENOMQ8NH69
Homologs : HomoloGeneOR5W2
Homology/Alignments : Family Browser (UCSC)OR5W2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR5W2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR5W2
dbVarOR5W2
ClinVarOR5W2
1000_GenomesOR5W2 
Exome Variant ServerOR5W2
ExAC (Exome Aggregation Consortium)OR5W2 (select the gene name)
Genetic variants : HAPMAP390148
Genomic Variants (DGV)OR5W2 [DGVbeta]
DECIPHEROR5W2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR5W2 
Mutations
ICGC Data PortalOR5W2 
TCGA Data PortalOR5W2 
Broad Tumor PortalOR5W2
OASIS PortalOR5W2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR5W2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR5W2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR5W2
DgiDB (Drug Gene Interaction Database)OR5W2
DoCM (Curated mutations)OR5W2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR5W2 (select a term)
intoGenOR5W2
Cancer3DOR5W2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR5W2
Genetic Testing Registry OR5W2
NextProtQ8NH69 [Medical]
TSGene390148
GENETestsOR5W2
Target ValidationOR5W2
Huge Navigator OR5W2 [HugePedia]
snp3D : Map Gene to Disease390148
BioCentury BCIQOR5W2
ClinGenOR5W2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390148
Chemical/Pharm GKB GenePA32572
Clinical trialOR5W2
Miscellaneous
canSAR (ICR)OR5W2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR5W2
EVEXOR5W2
GoPubMedOR5W2
iHOPOR5W2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:29 CEST 2017

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