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OR6C1 (olfactory receptor family 6 subfamily C member 1)

Identity

Alias_namesolfactory receptor, family 6, subfamily C, member 1
Alias_symbol (synonym)OST267
Other alias
HGNC (Hugo) OR6C1
LocusID (NCBI) 390321
Atlas_Id 71458
Location 12q13.2  [Link to chromosome band 12q13]
Location_base_pair Starts at 55320600 and ends at 55321538 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR6C1   8355
Cards
Entrez_Gene (NCBI)OR6C1  390321  olfactory receptor family 6 subfamily C member 1
AliasesOST267
GeneCards (Weizmann)OR6C1
Ensembl hg19 (Hinxton)ENSG00000205330 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205330 [Gene_View]  chr12:55320600-55321538 [Contig_View]  OR6C1 [Vega]
ICGC DataPortalENSG00000205330
TCGA cBioPortalOR6C1
AceView (NCBI)OR6C1
Genatlas (Paris)OR6C1
WikiGenes390321
SOURCE (Princeton)OR6C1
Genetics Home Reference (NIH)OR6C1
Genomic and cartography
GoldenPath hg38 (UCSC)OR6C1  -     chr12:55320600-55321538 +  12q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR6C1  -     12q13.2   [Description]    (hg19-Feb_2009)
EnsemblOR6C1 - 12q13.2 [CytoView hg19]  OR6C1 - 12q13.2 [CytoView hg38]
Mapping of homologs : NCBIOR6C1 [Mapview hg19]  OR6C1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136957 BC136965
RefSeq transcript (Entrez)NM_001005182
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR6C1
Cluster EST : UnigeneHs.553763 [ NCBI ]
CGAP (NCI)Hs.553763
Alternative Splicing GalleryENSG00000205330
Gene ExpressionOR6C1 [ NCBI-GEO ]   OR6C1 [ EBI - ARRAY_EXPRESS ]   OR6C1 [ SEEK ]   OR6C1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR6C1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390321
GTEX Portal (Tissue expression)OR6C1
Human Protein AtlasENSG00000205330-OR6C1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RD1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RD1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RD1
Splice isoforms : SwissVarQ96RD1
PhosPhoSitePlusQ96RD1
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR6C1
DMDM Disease mutations390321
Blocks (Seattle)OR6C1
SuperfamilyQ96RD1
Human Protein Atlas [tissue]ENSG00000205330-OR6C1 [tissue]
Peptide AtlasQ96RD1
HPRD11416
IPIIPI00399337   
Protein Interaction databases
DIP (DOE-UCLA)Q96RD1
IntAct (EBI)Q96RD1
FunCoupENSG00000205330
BioGRIDOR6C1
STRING (EMBL)OR6C1
ZODIACOR6C1
Ontologies - Pathways
QuickGOQ96RD1
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR6C1
Atlas of Cancer Signalling NetworkOR6C1
Wikipedia pathwaysOR6C1
Orthology - Evolution
OrthoDB390321
GeneTree (enSembl)ENSG00000205330
Phylogenetic Trees/Animal Genes : TreeFamOR6C1
HOVERGENQ96RD1
HOGENOMQ96RD1
Homologs : HomoloGeneOR6C1
Homology/Alignments : Family Browser (UCSC)OR6C1
Gene fusions - Rearrangements
Tumor Fusion PortalOR6C1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR6C1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR6C1
dbVarOR6C1
ClinVarOR6C1
1000_GenomesOR6C1 
Exome Variant ServerOR6C1
ExAC (Exome Aggregation Consortium)ENSG00000205330
GNOMAD BrowserENSG00000205330
Genetic variants : HAPMAP390321
Genomic Variants (DGV)OR6C1 [DGVbeta]
DECIPHEROR6C1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR6C1 
Mutations
ICGC Data PortalOR6C1 
TCGA Data PortalOR6C1 
Broad Tumor PortalOR6C1
OASIS PortalOR6C1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR6C1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR6C1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR6C1
DgiDB (Drug Gene Interaction Database)OR6C1
DoCM (Curated mutations)OR6C1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR6C1 (select a term)
intoGenOR6C1
Cancer3DOR6C1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR6C1
MedgenOR6C1
Genetic Testing Registry OR6C1
NextProtQ96RD1 [Medical]
TSGene390321
GENETestsOR6C1
Target ValidationOR6C1
Huge Navigator OR6C1 [HugePedia]
snp3D : Map Gene to Disease390321
BioCentury BCIQOR6C1
ClinGenOR6C1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390321
Chemical/Pharm GKB GenePA32579
Clinical trialOR6C1
Miscellaneous
canSAR (ICR)OR6C1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR6C1
EVEXOR6C1
GoPubMedOR6C1
iHOPOR6C1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:27:05 CET 2017

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