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OR6C2 (olfactory receptor family 6 subfamily C member 2)

Identity

Alias_namesolfactory receptor, family 6, subfamily C, member 2
Alias_symbol (synonym)OR6C67
Other alias
HGNC (Hugo) OR6C2
LocusID (NCBI) 341416
Atlas_Id 71459
Location 12q13.2  [Link to chromosome band 12q13]
Location_base_pair Starts at 55452214 and ends at 55453152 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR6C2   15436
Cards
Entrez_Gene (NCBI)OR6C2  341416  olfactory receptor family 6 subfamily C member 2
AliasesOR6C67
GeneCards (Weizmann)OR6C2
Ensembl hg19 (Hinxton)ENSG00000179695 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179695 [Gene_View]  chr12:55452214-55453152 [Contig_View]  OR6C2 [Vega]
ICGC DataPortalENSG00000179695
TCGA cBioPortalOR6C2
AceView (NCBI)OR6C2
Genatlas (Paris)OR6C2
WikiGenes341416
SOURCE (Princeton)OR6C2
Genetics Home Reference (NIH)OR6C2
Genomic and cartography
GoldenPath hg38 (UCSC)OR6C2  -     chr12:55452214-55453152 +  12q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR6C2  -     12q13.2   [Description]    (hg19-Feb_2009)
EnsemblOR6C2 - 12q13.2 [CytoView hg19]  OR6C2 - 12q13.2 [CytoView hg38]
Mapping of homologs : NCBIOR6C2 [Mapview hg19]  OR6C2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC148630
RefSeq transcript (Entrez)NM_054105
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR6C2
Cluster EST : UnigeneHs.524483 [ NCBI ]
CGAP (NCI)Hs.524483
Alternative Splicing GalleryENSG00000179695
Gene ExpressionOR6C2 [ NCBI-GEO ]   OR6C2 [ EBI - ARRAY_EXPRESS ]   OR6C2 [ SEEK ]   OR6C2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR6C2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)341416
GTEX Portal (Tissue expression)OR6C2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZP2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZP2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZP2
Splice isoforms : SwissVarQ9NZP2
PhosPhoSitePlusQ9NZP2
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR6C2
DMDM Disease mutations341416
Blocks (Seattle)OR6C2
SuperfamilyQ9NZP2
Human Protein AtlasENSG00000179695
Peptide AtlasQ9NZP2
HPRD17773
IPIIPI00437595   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZP2
IntAct (EBI)Q9NZP2
FunCoupENSG00000179695
BioGRIDOR6C2
STRING (EMBL)OR6C2
ZODIACOR6C2
Ontologies - Pathways
QuickGOQ9NZP2
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR6C2
Atlas of Cancer Signalling NetworkOR6C2
Wikipedia pathwaysOR6C2
Orthology - Evolution
OrthoDB341416
GeneTree (enSembl)ENSG00000179695
Phylogenetic Trees/Animal Genes : TreeFamOR6C2
HOVERGENQ9NZP2
HOGENOMQ9NZP2
Homologs : HomoloGeneOR6C2
Homology/Alignments : Family Browser (UCSC)OR6C2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR6C2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR6C2
dbVarOR6C2
ClinVarOR6C2
1000_GenomesOR6C2 
Exome Variant ServerOR6C2
ExAC (Exome Aggregation Consortium)OR6C2 (select the gene name)
Genetic variants : HAPMAP341416
Genomic Variants (DGV)OR6C2 [DGVbeta]
DECIPHEROR6C2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR6C2 
Mutations
ICGC Data PortalOR6C2 
TCGA Data PortalOR6C2 
Broad Tumor PortalOR6C2
OASIS PortalOR6C2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR6C2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR6C2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR6C2
DgiDB (Drug Gene Interaction Database)OR6C2
DoCM (Curated mutations)OR6C2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR6C2 (select a term)
intoGenOR6C2
Cancer3DOR6C2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR6C2
Genetic Testing Registry OR6C2
NextProtQ9NZP2 [Medical]
TSGene341416
GENETestsOR6C2
Target ValidationOR6C2
Huge Navigator OR6C2 [HugePedia]
snp3D : Map Gene to Disease341416
BioCentury BCIQOR6C2
ClinGenOR6C2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD341416
Chemical/Pharm GKB GenePA32580
Clinical trialOR6C2
Miscellaneous
canSAR (ICR)OR6C2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR6C2
EVEXOR6C2
GoPubMedOR6C2
iHOPOR6C2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:34:51 CEST 2017

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