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OR6C4 (olfactory receptor family 6 subfamily C member 4)

Identity

Alias_namesolfactory receptor, family 6, subfamily C, member 4
Other aliasOR12-10
HGNC (Hugo) OR6C4
LocusID (NCBI) 341418
Atlas_Id 71461
Location 12q13.2  [Link to chromosome band 12q13]
Location_base_pair Starts at 55551227 and ends at 55552156 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR6C4   19632
Cards
Entrez_Gene (NCBI)OR6C4  341418  olfactory receptor family 6 subfamily C member 4
AliasesOR12-10
GeneCards (Weizmann)OR6C4
Ensembl hg19 (Hinxton)ENSG00000179626 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179626 [Gene_View]  chr12:55551227-55552156 [Contig_View]  OR6C4 [Vega]
ICGC DataPortalENSG00000179626
TCGA cBioPortalOR6C4
AceView (NCBI)OR6C4
Genatlas (Paris)OR6C4
WikiGenes341418
SOURCE (Princeton)OR6C4
Genetics Home Reference (NIH)OR6C4
Genomic and cartography
GoldenPath hg38 (UCSC)OR6C4  -     chr12:55551227-55552156 +  12q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR6C4  -     12q13.2   [Description]    (hg19-Feb_2009)
EnsemblOR6C4 - 12q13.2 [CytoView hg19]  OR6C4 - 12q13.2 [CytoView hg38]
Mapping of homologs : NCBIOR6C4 [Mapview hg19]  OR6C4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137000 BC137001 M87866
RefSeq transcript (Entrez)NM_001005494
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR6C4
Cluster EST : UnigeneHs.554552 [ NCBI ]
CGAP (NCI)Hs.554552
Alternative Splicing GalleryENSG00000179626
Gene ExpressionOR6C4 [ NCBI-GEO ]   OR6C4 [ EBI - ARRAY_EXPRESS ]   OR6C4 [ SEEK ]   OR6C4 [ MEM ]
Gene Expression Viewer (FireBrowse)OR6C4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)341418
GTEX Portal (Tissue expression)OR6C4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGE1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGE1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGE1
Splice isoforms : SwissVarQ8NGE1
PhosPhoSitePlusQ8NGE1
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR6C4
DMDM Disease mutations341418
Blocks (Seattle)OR6C4
SuperfamilyQ8NGE1
Human Protein AtlasENSG00000179626
Peptide AtlasQ8NGE1
HPRD17774
IPIIPI00303374   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGE1
IntAct (EBI)Q8NGE1
FunCoupENSG00000179626
BioGRIDOR6C4
STRING (EMBL)OR6C4
ZODIACOR6C4
Ontologies - Pathways
QuickGOQ8NGE1
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR6C4
Atlas of Cancer Signalling NetworkOR6C4
Wikipedia pathwaysOR6C4
Orthology - Evolution
OrthoDB341418
GeneTree (enSembl)ENSG00000179626
Phylogenetic Trees/Animal Genes : TreeFamOR6C4
HOVERGENQ8NGE1
HOGENOMQ8NGE1
Homologs : HomoloGeneOR6C4
Homology/Alignments : Family Browser (UCSC)OR6C4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR6C4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR6C4
dbVarOR6C4
ClinVarOR6C4
1000_GenomesOR6C4 
Exome Variant ServerOR6C4
ExAC (Exome Aggregation Consortium)OR6C4 (select the gene name)
Genetic variants : HAPMAP341418
Genomic Variants (DGV)OR6C4 [DGVbeta]
DECIPHEROR6C4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR6C4 
Mutations
ICGC Data PortalOR6C4 
TCGA Data PortalOR6C4 
Broad Tumor PortalOR6C4
OASIS PortalOR6C4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR6C4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR6C4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR6C4
DgiDB (Drug Gene Interaction Database)OR6C4
DoCM (Curated mutations)OR6C4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR6C4 (select a term)
intoGenOR6C4
Cancer3DOR6C4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR6C4
Genetic Testing Registry OR6C4
NextProtQ8NGE1 [Medical]
TSGene341418
GENETestsOR6C4
Huge Navigator OR6C4 [HugePedia]
snp3D : Map Gene to Disease341418
BioCentury BCIQOR6C4
ClinGenOR6C4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD341418
Chemical/Pharm GKB GenePA134970819
Clinical trialOR6C4
Miscellaneous
canSAR (ICR)OR6C4 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR6C4
EVEXOR6C4
GoPubMedOR6C4
iHOPOR6C4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:47:06 CEST 2017

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