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OR6C6 (olfactory receptor family 6 subfamily C member 6)

Identity

Alias_namesolfactory receptor, family 6, subfamily C, member 6
Other alias-
HGNC (Hugo) OR6C6
LocusID (NCBI) 283365
Atlas_Id 71462
Location 12q13.2  [Link to chromosome band 12q13]
Location_base_pair Starts at 55294288 and ends at 55295232 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR6C6   31293
Cards
Entrez_Gene (NCBI)OR6C6  283365  olfactory receptor family 6 subfamily C member 6
Aliases
GeneCards (Weizmann)OR6C6
Ensembl hg19 (Hinxton)ENSG00000188324 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188324 [Gene_View]  chr12:55294288-55295232 [Contig_View]  OR6C6 [Vega]
ICGC DataPortalENSG00000188324
TCGA cBioPortalOR6C6
AceView (NCBI)OR6C6
Genatlas (Paris)OR6C6
WikiGenes283365
SOURCE (Princeton)OR6C6
Genetics Home Reference (NIH)OR6C6
Genomic and cartography
GoldenPath hg38 (UCSC)OR6C6  -     chr12:55294288-55295232 -  12q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR6C6  -     12q13.2   [Description]    (hg19-Feb_2009)
EnsemblOR6C6 - 12q13.2 [CytoView hg19]  OR6C6 - 12q13.2 [CytoView hg38]
Mapping of homologs : NCBIOR6C6 [Mapview hg19]  OR6C6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005493
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR6C6
Cluster EST : UnigeneHs.554555 [ NCBI ]
CGAP (NCI)Hs.554555
Alternative Splicing GalleryENSG00000188324
Gene ExpressionOR6C6 [ NCBI-GEO ]   OR6C6 [ EBI - ARRAY_EXPRESS ]   OR6C6 [ SEEK ]   OR6C6 [ MEM ]
Gene Expression Viewer (FireBrowse)OR6C6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283365
GTEX Portal (Tissue expression)OR6C6
Human Protein AtlasENSG00000188324-OR6C6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NF89   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NF89  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NF89
Splice isoforms : SwissVarA6NF89
PhosPhoSitePlusA6NF89
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR6C6
DMDM Disease mutations283365
Blocks (Seattle)OR6C6
SuperfamilyA6NF89
Human Protein Atlas [tissue]ENSG00000188324-OR6C6 [tissue]
Peptide AtlasA6NF89
HPRD17775
IPIIPI00470601   
Protein Interaction databases
DIP (DOE-UCLA)A6NF89
IntAct (EBI)A6NF89
FunCoupENSG00000188324
BioGRIDOR6C6
STRING (EMBL)OR6C6
ZODIACOR6C6
Ontologies - Pathways
QuickGOA6NF89
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR6C6
Atlas of Cancer Signalling NetworkOR6C6
Wikipedia pathwaysOR6C6
Orthology - Evolution
OrthoDB283365
GeneTree (enSembl)ENSG00000188324
Phylogenetic Trees/Animal Genes : TreeFamOR6C6
HOVERGENA6NF89
HOGENOMA6NF89
Homologs : HomoloGeneOR6C6
Homology/Alignments : Family Browser (UCSC)OR6C6
Gene fusions - Rearrangements
Tumor Fusion PortalOR6C6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR6C6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR6C6
dbVarOR6C6
ClinVarOR6C6
1000_GenomesOR6C6 
Exome Variant ServerOR6C6
ExAC (Exome Aggregation Consortium)ENSG00000188324
GNOMAD BrowserENSG00000188324
Genetic variants : HAPMAP283365
Genomic Variants (DGV)OR6C6 [DGVbeta]
DECIPHEROR6C6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR6C6 
Mutations
ICGC Data PortalOR6C6 
TCGA Data PortalOR6C6 
Broad Tumor PortalOR6C6
OASIS PortalOR6C6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR6C6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR6C6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR6C6
DgiDB (Drug Gene Interaction Database)OR6C6
DoCM (Curated mutations)OR6C6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR6C6 (select a term)
intoGenOR6C6
Cancer3DOR6C6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR6C6
MedgenOR6C6
Genetic Testing Registry OR6C6
NextProtA6NF89 [Medical]
TSGene283365
GENETestsOR6C6
Target ValidationOR6C6
Huge Navigator OR6C6 [HugePedia]
snp3D : Map Gene to Disease283365
BioCentury BCIQOR6C6
ClinGenOR6C6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283365
Chemical/Pharm GKB GenePA134937223
Clinical trialOR6C6
Miscellaneous
canSAR (ICR)OR6C6 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR6C6
EVEXOR6C6
GoPubMedOR6C6
iHOPOR6C6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:27:06 CET 2017

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