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OR6C70 (olfactory receptor family 6 subfamily C member 70)

Identity

Alias_namesolfactory receptor, family 6, subfamily C, member 70
Other alias-
HGNC (Hugo) OR6C70
LocusID (NCBI) 390327
Atlas_Id 71465
Location 12q13.2  [Link to chromosome band 12q13]
Location_base_pair Starts at 55469200 and ends at 55470138 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR6C70   31299
Cards
Entrez_Gene (NCBI)OR6C70  390327  olfactory receptor family 6 subfamily C member 70
Aliases
GeneCards (Weizmann)OR6C70
Ensembl hg19 (Hinxton)ENSG00000184954 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184954 [Gene_View]  chr12:55469200-55470138 [Contig_View]  OR6C70 [Vega]
ICGC DataPortalENSG00000184954
TCGA cBioPortalOR6C70
AceView (NCBI)OR6C70
Genatlas (Paris)OR6C70
WikiGenes390327
SOURCE (Princeton)OR6C70
Genetics Home Reference (NIH)OR6C70
Genomic and cartography
GoldenPath hg38 (UCSC)OR6C70  -     chr12:55469200-55470138 -  12q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR6C70  -     12q13.2   [Description]    (hg19-Feb_2009)
EnsemblOR6C70 - 12q13.2 [CytoView hg19]  OR6C70 - 12q13.2 [CytoView hg38]
Mapping of homologs : NCBIOR6C70 [Mapview hg19]  OR6C70 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005499
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR6C70
Cluster EST : UnigeneHs.632718 [ NCBI ]
CGAP (NCI)Hs.632718
Alternative Splicing GalleryENSG00000184954
Gene ExpressionOR6C70 [ NCBI-GEO ]   OR6C70 [ EBI - ARRAY_EXPRESS ]   OR6C70 [ SEEK ]   OR6C70 [ MEM ]
Gene Expression Viewer (FireBrowse)OR6C70 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390327
GTEX Portal (Tissue expression)OR6C70
Human Protein AtlasENSG00000184954-OR6C70 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NIJ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NIJ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NIJ9
Splice isoforms : SwissVarA6NIJ9
PhosPhoSitePlusA6NIJ9
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR6C70
DMDM Disease mutations390327
Blocks (Seattle)OR6C70
SuperfamilyA6NIJ9
Human Protein Atlas [tissue]ENSG00000184954-OR6C70 [tissue]
Peptide AtlasA6NIJ9
HPRD15059
IPIIPI00470605   
Protein Interaction databases
DIP (DOE-UCLA)A6NIJ9
IntAct (EBI)A6NIJ9
FunCoupENSG00000184954
BioGRIDOR6C70
STRING (EMBL)OR6C70
ZODIACOR6C70
Ontologies - Pathways
QuickGOA6NIJ9
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR6C70
Atlas of Cancer Signalling NetworkOR6C70
Wikipedia pathwaysOR6C70
Orthology - Evolution
OrthoDB390327
GeneTree (enSembl)ENSG00000184954
Phylogenetic Trees/Animal Genes : TreeFamOR6C70
HOVERGENA6NIJ9
HOGENOMA6NIJ9
Homologs : HomoloGeneOR6C70
Homology/Alignments : Family Browser (UCSC)OR6C70
Gene fusions - Rearrangements
Tumor Fusion PortalOR6C70
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR6C70 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR6C70
dbVarOR6C70
ClinVarOR6C70
1000_GenomesOR6C70 
Exome Variant ServerOR6C70
ExAC (Exome Aggregation Consortium)ENSG00000184954
GNOMAD BrowserENSG00000184954
Genetic variants : HAPMAP390327
Genomic Variants (DGV)OR6C70 [DGVbeta]
DECIPHEROR6C70 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR6C70 
Mutations
ICGC Data PortalOR6C70 
TCGA Data PortalOR6C70 
Broad Tumor PortalOR6C70
OASIS PortalOR6C70 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR6C70  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR6C70
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR6C70
DgiDB (Drug Gene Interaction Database)OR6C70
DoCM (Curated mutations)OR6C70 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR6C70 (select a term)
intoGenOR6C70
Cancer3DOR6C70(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR6C70
MedgenOR6C70
Genetic Testing Registry OR6C70
NextProtA6NIJ9 [Medical]
TSGene390327
GENETestsOR6C70
Target ValidationOR6C70
Huge Navigator OR6C70 [HugePedia]
snp3D : Map Gene to Disease390327
BioCentury BCIQOR6C70
ClinGenOR6C70
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390327
Chemical/Pharm GKB GenePA134915898
Clinical trialOR6C70
Miscellaneous
canSAR (ICR)OR6C70 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR6C70
EVEXOR6C70
GoPubMedOR6C70
iHOPOR6C70
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:27:07 CET 2017

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