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OR6F1 (olfactory receptor family 6 subfamily F member 1)

Identity

Alias_namesolfactory receptor, family 6, subfamily F, member 1
Alias_symbol (synonym)OST731
Other aliasOR1-34
OR1-38
HGNC (Hugo) OR6F1
LocusID (NCBI) 343169
Atlas_Id 71469
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 247711829 and ends at 247712755 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OR6F1   15027
Cards
Entrez_Gene (NCBI)OR6F1  343169  olfactory receptor family 6 subfamily F member 1
AliasesOR1-34; OR1-38; OST731
GeneCards (Weizmann)OR6F1
Ensembl hg19 (Hinxton)ENSG00000169214 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169214 [Gene_View]  chr1:247711829-247712755 [Contig_View]  OR6F1 [Vega]
ICGC DataPortalENSG00000169214
TCGA cBioPortalOR6F1
AceView (NCBI)OR6F1
Genatlas (Paris)OR6F1
WikiGenes343169
SOURCE (Princeton)OR6F1
Genetics Home Reference (NIH)OR6F1
Genomic and cartography
GoldenPath hg38 (UCSC)OR6F1  -     chr1:247711829-247712755 -  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR6F1  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblOR6F1 - 1q44 [CytoView hg19]  OR6F1 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIOR6F1 [Mapview hg19]  OR6F1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137142 BC137143
RefSeq transcript (Entrez)NM_001005286
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR6F1
Cluster EST : UnigeneHs.591529 [ NCBI ]
CGAP (NCI)Hs.591529
Alternative Splicing GalleryENSG00000169214
Gene ExpressionOR6F1 [ NCBI-GEO ]   OR6F1 [ EBI - ARRAY_EXPRESS ]   OR6F1 [ SEEK ]   OR6F1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR6F1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)343169
GTEX Portal (Tissue expression)OR6F1
Human Protein AtlasENSG00000169214-OR6F1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGZ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGZ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGZ6
Splice isoforms : SwissVarQ8NGZ6
PhosPhoSitePlusQ8NGZ6
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)7TM_GPCR_Srsx (SM01381)  
Conserved Domain (NCBI)OR6F1
DMDM Disease mutations343169
Blocks (Seattle)OR6F1
SuperfamilyQ8NGZ6
Human Protein Atlas [tissue]ENSG00000169214-OR6F1 [tissue]
Peptide AtlasQ8NGZ6
HPRD17777
IPIIPI00303771   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGZ6
IntAct (EBI)Q8NGZ6
FunCoupENSG00000169214
BioGRIDOR6F1
STRING (EMBL)OR6F1
ZODIACOR6F1
Ontologies - Pathways
QuickGOQ8NGZ6
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR6F1
Atlas of Cancer Signalling NetworkOR6F1
Wikipedia pathwaysOR6F1
Orthology - Evolution
OrthoDB343169
GeneTree (enSembl)ENSG00000169214
Phylogenetic Trees/Animal Genes : TreeFamOR6F1
HOVERGENQ8NGZ6
HOGENOMQ8NGZ6
Homologs : HomoloGeneOR6F1
Homology/Alignments : Family Browser (UCSC)OR6F1
Gene fusions - Rearrangements
Fusion : QuiverOR6F1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR6F1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR6F1
dbVarOR6F1
ClinVarOR6F1
1000_GenomesOR6F1 
Exome Variant ServerOR6F1
ExAC (Exome Aggregation Consortium)ENSG00000169214
GNOMAD BrowserENSG00000169214
Genetic variants : HAPMAP343169
Genomic Variants (DGV)OR6F1 [DGVbeta]
DECIPHEROR6F1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR6F1 
Mutations
ICGC Data PortalOR6F1 
TCGA Data PortalOR6F1 
Broad Tumor PortalOR6F1
OASIS PortalOR6F1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR6F1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR6F1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR6F1
DgiDB (Drug Gene Interaction Database)OR6F1
DoCM (Curated mutations)OR6F1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR6F1 (select a term)
intoGenOR6F1
Cancer3DOR6F1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR6F1
MedgenOR6F1
Genetic Testing Registry OR6F1
NextProtQ8NGZ6 [Medical]
TSGene343169
GENETestsOR6F1
Target ValidationOR6F1
Huge Navigator OR6F1 [HugePedia]
snp3D : Map Gene to Disease343169
BioCentury BCIQOR6F1
ClinGenOR6F1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD343169
Chemical/Pharm GKB GenePA32585
Clinical trialOR6F1
Miscellaneous
canSAR (ICR)OR6F1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR6F1
EVEXOR6F1
GoPubMedOR6F1
iHOPOR6F1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:46:19 CET 2018
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