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OR6J1 (olfactory receptor family 6 subfamily J member 1 (gene/pseudogene))

Identity

Alias_namesOR6J2
OR6J1P
olfactory receptor, family 6, subfamily J, member 1
olfactory receptor, family 6, subfamily J, member 1 (gene/pseudogene)
Other alias
HGNC (Hugo) OR6J1
LocusID (NCBI) 79549
Atlas_Id 79845
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 22633566 and ends at 22634844 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR6J1   14707
Cards
Entrez_Gene (NCBI)OR6J1  79549  olfactory receptor family 6 subfamily J member 1 (gene/pseudogene)
AliasesOR6J1P; OR6J2
GeneCards (Weizmann)OR6J1
Ensembl hg19 (Hinxton)ENSG00000255804 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255804 [Gene_View]  chr14:22633566-22634844 [Contig_View]  OR6J1 [Vega]
ICGC DataPortalENSG00000255804
TCGA cBioPortalOR6J1
AceView (NCBI)OR6J1
Genatlas (Paris)OR6J1
WikiGenes79549
SOURCE (Princeton)OR6J1
Genetics Home Reference (NIH)OR6J1
Genomic and cartography
GoldenPath hg38 (UCSC)OR6J1  -     chr14:22633566-22634844 -  14q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR6J1  -     14q11.2   [Description]    (hg19-Feb_2009)
EnsemblOR6J1 - 14q11.2 [CytoView hg19]  OR6J1 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBIOR6J1 [Mapview hg19]  OR6J1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001348233
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR6J1
Alternative Splicing GalleryENSG00000255804
Gene ExpressionOR6J1 [ NCBI-GEO ]   OR6J1 [ EBI - ARRAY_EXPRESS ]   OR6J1 [ SEEK ]   OR6J1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR6J1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79549
GTEX Portal (Tissue expression)OR6J1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGC5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGC5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGC5
Splice isoforms : SwissVarQ8NGC5
PhosPhoSitePlusQ8NGC5
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR6J1
DMDM Disease mutations79549
Blocks (Seattle)OR6J1
SuperfamilyQ8NGC5
Human Protein AtlasENSG00000255804
Peptide AtlasQ8NGC5
IPIIPI00168977   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGC5
IntAct (EBI)Q8NGC5
FunCoupENSG00000255804
BioGRIDOR6J1
STRING (EMBL)OR6J1
ZODIACOR6J1
Ontologies - Pathways
QuickGOQ8NGC5
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR6J1
Atlas of Cancer Signalling NetworkOR6J1
Wikipedia pathwaysOR6J1
Orthology - Evolution
OrthoDB79549
GeneTree (enSembl)ENSG00000255804
Phylogenetic Trees/Animal Genes : TreeFamOR6J1
HOVERGENQ8NGC5
HOGENOMQ8NGC5
Homologs : HomoloGeneOR6J1
Homology/Alignments : Family Browser (UCSC)OR6J1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR6J1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR6J1
dbVarOR6J1
ClinVarOR6J1
1000_GenomesOR6J1 
Exome Variant ServerOR6J1
ExAC (Exome Aggregation Consortium)OR6J1 (select the gene name)
Genetic variants : HAPMAP79549
Genomic Variants (DGV)OR6J1 [DGVbeta]
DECIPHEROR6J1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR6J1 
Mutations
ICGC Data PortalOR6J1 
TCGA Data PortalOR6J1 
Broad Tumor PortalOR6J1
OASIS PortalOR6J1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOR6J1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR6J1
DgiDB (Drug Gene Interaction Database)OR6J1
DoCM (Curated mutations)OR6J1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR6J1 (select a term)
intoGenOR6J1
Cancer3DOR6J1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR6J1
Genetic Testing Registry OR6J1
NextProtQ8NGC5 [Medical]
TSGene79549
GENETestsOR6J1
Target ValidationOR6J1
Huge Navigator OR6J1 [HugePedia]
snp3D : Map Gene to Disease79549
BioCentury BCIQOR6J1
ClinGenOR6J1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79549
Chemical/Pharm GKB GenePA32586
Clinical trialOR6J1
Miscellaneous
canSAR (ICR)OR6J1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR6J1
EVEXOR6J1
GoPubMedOR6J1
iHOPOR6J1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:31 CEST 2017

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