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OR6K2 (olfactory receptor, family 6, subfamily K, member 2)

Identity

Alias_namesolfactory receptor, family 6, subfamily K, member 2
Other aliasOR1-17
HGNC (Hugo) OR6K2
LocusID (NCBI) 81448
Atlas_Id 71470
Location 1q23.1  [Link to chromosome band 1q23]
Location_base_pair Starts at 158669468 and ends at 158670442 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR6K2   15029
Cards
Entrez_Gene (NCBI)OR6K2  81448  olfactory receptor, family 6, subfamily K, member 2
AliasesOR1-17
GeneCards (Weizmann)OR6K2
Ensembl hg19 (Hinxton)ENSG00000196171 [Gene_View]  chr1:158669468-158670442 [Contig_View]  OR6K2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196171 [Gene_View]  chr1:158669468-158670442 [Contig_View]  OR6K2 [Vega]
ICGC DataPortalENSG00000196171
TCGA cBioPortalOR6K2
AceView (NCBI)OR6K2
Genatlas (Paris)OR6K2
WikiGenes81448
SOURCE (Princeton)OR6K2
Genetics Home Reference (NIH)OR6K2
Genomic and cartography
GoldenPath hg19 (UCSC)OR6K2  -     chr1:158669468-158670442 -  1q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR6K2  -     1q23.1   [Description]    (hg38-Dec_2013)
EnsemblOR6K2 - 1q23.1 [CytoView hg19]  OR6K2 - 1q23.1 [CytoView hg38]
Mapping of homologs : NCBIOR6K2 [Mapview hg19]  OR6K2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137022 BC137023
RefSeq transcript (Entrez)NM_001005279
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)OR6K2
Cluster EST : UnigeneHs.554489 [ NCBI ]
CGAP (NCI)Hs.554489
Alternative Splicing GalleryENSG00000196171
Gene ExpressionOR6K2 [ NCBI-GEO ]   OR6K2 [ EBI - ARRAY_EXPRESS ]   OR6K2 [ SEEK ]   OR6K2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR6K2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81448
GTEX Portal (Tissue expression)OR6K2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGY2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGY2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGY2
Splice isoforms : SwissVarQ8NGY2
PhosPhoSitePlusQ8NGY2
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR6K2
DMDM Disease mutations81448
Blocks (Seattle)OR6K2
SuperfamilyQ8NGY2
Human Protein AtlasENSG00000196171
Peptide AtlasQ8NGY2
HPRD15063
IPIIPI00386388   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGY2
IntAct (EBI)Q8NGY2
FunCoupENSG00000196171
BioGRIDOR6K2
STRING (EMBL)OR6K2
ZODIACOR6K2
Ontologies - Pathways
QuickGOQ8NGY2
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR6K2
Atlas of Cancer Signalling NetworkOR6K2
Wikipedia pathwaysOR6K2
Orthology - Evolution
OrthoDB81448
GeneTree (enSembl)ENSG00000196171
Phylogenetic Trees/Animal Genes : TreeFamOR6K2
HOVERGENQ8NGY2
HOGENOMQ8NGY2
Homologs : HomoloGeneOR6K2
Homology/Alignments : Family Browser (UCSC)OR6K2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR6K2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR6K2
dbVarOR6K2
ClinVarOR6K2
1000_GenomesOR6K2 
Exome Variant ServerOR6K2
ExAC (Exome Aggregation Consortium)OR6K2 (select the gene name)
Genetic variants : HAPMAP81448
Genomic Variants (DGV)OR6K2 [DGVbeta]
DECIPHER (Syndromes)1:158669468-158670442  ENSG00000196171
CONAN: Copy Number AnalysisOR6K2 
Mutations
ICGC Data PortalOR6K2 
TCGA Data PortalOR6K2 
Broad Tumor PortalOR6K2
OASIS PortalOR6K2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR6K2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR6K2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR6K2
DgiDB (Drug Gene Interaction Database)OR6K2
DoCM (Curated mutations)OR6K2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR6K2 (select a term)
intoGenOR6K2
Cancer3DOR6K2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR6K2
Genetic Testing Registry OR6K2
NextProtQ8NGY2 [Medical]
TSGene81448
GENETestsOR6K2
Huge Navigator OR6K2 [HugePedia]
snp3D : Map Gene to Disease81448
BioCentury BCIQOR6K2
ClinGenOR6K2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81448
Chemical/Pharm GKB GenePA32589
Clinical trialOR6K2
Miscellaneous
canSAR (ICR)OR6K2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR6K2
EVEXOR6K2
GoPubMedOR6K2
iHOPOR6K2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:37:09 CET 2017

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