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OR6P1 (olfactory receptor family 6 subfamily P member 1)

Identity

Alias_namesolfactory receptor, family 6, subfamily P, member 1
Other alias-
HGNC (Hugo) OR6P1
LocusID (NCBI) 128366
Atlas_Id 71476
Location 1q23.1  [Link to chromosome band 1q23]
Location_base_pair Starts at 158562651 and ends at 158563604 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR6P1   15036
Cards
Entrez_Gene (NCBI)OR6P1  128366  olfactory receptor family 6 subfamily P member 1
Aliases
GeneCards (Weizmann)OR6P1
Ensembl hg19 (Hinxton)ENSG00000186440 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186440 [Gene_View]  chr1:158562651-158563604 [Contig_View]  OR6P1 [Vega]
ICGC DataPortalENSG00000186440
TCGA cBioPortalOR6P1
AceView (NCBI)OR6P1
Genatlas (Paris)OR6P1
WikiGenes128366
SOURCE (Princeton)OR6P1
Genetics Home Reference (NIH)OR6P1
Genomic and cartography
GoldenPath hg38 (UCSC)OR6P1  -     chr1:158562651-158563604 -  1q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR6P1  -     1q23.1   [Description]    (hg19-Feb_2009)
EnsemblOR6P1 - 1q23.1 [CytoView hg19]  OR6P1 - 1q23.1 [CytoView hg38]
Mapping of homologs : NCBIOR6P1 [Mapview hg19]  OR6P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001160325
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR6P1
Cluster EST : UnigeneHs.723122 [ NCBI ]
CGAP (NCI)Hs.723122
Alternative Splicing GalleryENSG00000186440
Gene ExpressionOR6P1 [ NCBI-GEO ]   OR6P1 [ EBI - ARRAY_EXPRESS ]   OR6P1 [ SEEK ]   OR6P1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR6P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128366
GTEX Portal (Tissue expression)OR6P1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGX9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGX9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGX9
Splice isoforms : SwissVarQ8NGX9
PhosPhoSitePlusQ8NGX9
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR6P1
DMDM Disease mutations128366
Blocks (Seattle)OR6P1
SuperfamilyQ8NGX9
Human Protein AtlasENSG00000186440
Peptide AtlasQ8NGX9
IPIIPI00303725   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGX9
IntAct (EBI)Q8NGX9
FunCoupENSG00000186440
BioGRIDOR6P1
STRING (EMBL)OR6P1
ZODIACOR6P1
Ontologies - Pathways
QuickGOQ8NGX9
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR6P1
Atlas of Cancer Signalling NetworkOR6P1
Wikipedia pathwaysOR6P1
Orthology - Evolution
OrthoDB128366
GeneTree (enSembl)ENSG00000186440
Phylogenetic Trees/Animal Genes : TreeFamOR6P1
HOVERGENQ8NGX9
HOGENOMQ8NGX9
Homologs : HomoloGeneOR6P1
Homology/Alignments : Family Browser (UCSC)OR6P1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR6P1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR6P1
dbVarOR6P1
ClinVarOR6P1
1000_GenomesOR6P1 
Exome Variant ServerOR6P1
ExAC (Exome Aggregation Consortium)OR6P1 (select the gene name)
Genetic variants : HAPMAP128366
Genomic Variants (DGV)OR6P1 [DGVbeta]
DECIPHEROR6P1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR6P1 
Mutations
ICGC Data PortalOR6P1 
TCGA Data PortalOR6P1 
Broad Tumor PortalOR6P1
OASIS PortalOR6P1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR6P1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR6P1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR6P1
DgiDB (Drug Gene Interaction Database)OR6P1
DoCM (Curated mutations)OR6P1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR6P1 (select a term)
intoGenOR6P1
Cancer3DOR6P1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR6P1
Genetic Testing Registry OR6P1
NextProtQ8NGX9 [Medical]
TSGene128366
GENETestsOR6P1
Target ValidationOR6P1
Huge Navigator OR6P1 [HugePedia]
snp3D : Map Gene to Disease128366
BioCentury BCIQOR6P1
ClinGenOR6P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128366
Chemical/Pharm GKB GenePA32601
Clinical trialOR6P1
Miscellaneous
canSAR (ICR)OR6P1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR6P1
EVEXOR6P1
GoPubMedOR6P1
iHOPOR6P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:34:55 CEST 2017

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